Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28533 | 5' | -49.8 | NC_005946.1 | + | 15848 | 0.66 | 0.989554 |
|
Target: 5'- gGCAAAGAuGGGAGUCAgcaaGCaggaCACgGa -3' miRNA: 3'- gUGUUUUUuCCCUCAGUa---CGg---GUGgU- -5' |
|||||||
| 28533 | 5' | -49.8 | NC_005946.1 | + | 87997 | 0.66 | 0.988042 |
|
Target: 5'- gACGAGAAAGGGAaaGcCGgugGCgaCCGCCAa -3' miRNA: 3'- gUGUUUUUUCCCU--CaGUa--CG--GGUGGU- -5' |
|||||||
| 28533 | 5' | -49.8 | NC_005946.1 | + | 84008 | 0.67 | 0.975161 |
|
Target: 5'- gGCGGGAAGGaGGGUgGUGCCUGCUc -3' miRNA: 3'- gUGUUUUUUCcCUCAgUACGGGUGGu -5' |
|||||||
| 28533 | 5' | -49.8 | NC_005946.1 | + | 46316 | 0.67 | 0.974322 |
|
Target: 5'- aACGGAcugcgacuucuccuGAGGGGGGUCcacAUGCCgUACCGa -3' miRNA: 3'- gUGUUU--------------UUUCCCUCAG---UACGG-GUGGU- -5' |
|||||||
| 28533 | 5' | -49.8 | NC_005946.1 | + | 53230 | 0.67 | 0.972286 |
|
Target: 5'- aACGGAGGGuGGAcgcaGUCAaGCCCGCCGc -3' miRNA: 3'- gUGUUUUUUcCCU----CAGUaCGGGUGGU- -5' |
|||||||
| 28533 | 5' | -49.8 | NC_005946.1 | + | 62253 | 0.67 | 0.972286 |
|
Target: 5'- aCGCGAuAGAuGGAGaCAUGCCCGgCGc -3' miRNA: 3'- -GUGUUuUUUcCCUCaGUACGGGUgGU- -5' |
|||||||
| 28533 | 5' | -49.8 | NC_005946.1 | + | 23600 | 0.69 | 0.94032 |
|
Target: 5'- gUACGAAA---GGAGUCAUGCCagugGCCGc -3' miRNA: 3'- -GUGUUUUuucCCUCAGUACGGg---UGGU- -5' |
|||||||
| 28533 | 5' | -49.8 | NC_005946.1 | + | 71514 | 0.69 | 0.923884 |
|
Target: 5'- gACAAGGAcGGG-GUgGUGCCCgACCu -3' miRNA: 3'- gUGUUUUUuCCCuCAgUACGGG-UGGu -5' |
|||||||
| 28533 | 5' | -49.8 | NC_005946.1 | + | 10129 | 0.7 | 0.917846 |
|
Target: 5'- gCACcucuGAGGGuccauGcCGUGCCCGCCGu -3' miRNA: 3'- -GUGuuuuUUCCCu----CaGUACGGGUGGU- -5' |
|||||||
| 28533 | 5' | -49.8 | NC_005946.1 | + | 83143 | 0.73 | 0.780565 |
|
Target: 5'- cCACGGAAAGGGaGGGUCAgccguccugagggaGCCCACUc -3' miRNA: 3'- -GUGUUUUUUCC-CUCAGUa-------------CGGGUGGu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home