Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28534 | 3' | -54.8 | NC_005946.1 | + | 102298 | 0.66 | 0.867787 |
Target: 5'- cGUGCaGGGccccgcacGCCA-GGGCGUCAgagucuauggucauGGGGGc -3' miRNA: 3'- aCAUG-CCU--------CGGUaCCCGCAGU--------------UCUCC- -5' |
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28534 | 3' | -54.8 | NC_005946.1 | + | 28588 | 0.67 | 0.83287 |
Target: 5'- cGgcCGGGGCCGUGGuGCcgggaGUCAcaaagguggacucgaAGGGGa -3' miRNA: 3'- aCauGCCUCGGUACC-CG-----CAGU---------------UCUCC- -5' |
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28534 | 3' | -54.8 | NC_005946.1 | + | 76315 | 0.68 | 0.784056 |
Target: 5'- gGUAUGGGGCCAgaGGGCccaAAGGGa -3' miRNA: 3'- aCAUGCCUCGGUa-CCCGcagUUCUCc -5' |
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28534 | 3' | -54.8 | NC_005946.1 | + | 8786 | 0.68 | 0.784056 |
Target: 5'- --gACGG-GUCccGGGCGUCGuacGAGGg -3' miRNA: 3'- acaUGCCuCGGuaCCCGCAGUu--CUCC- -5' |
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28534 | 3' | -54.8 | NC_005946.1 | + | 88475 | 0.69 | 0.745102 |
Target: 5'- ----aGGAGCuCAUGGaCGUCAAGaAGGa -3' miRNA: 3'- acaugCCUCG-GUACCcGCAGUUC-UCC- -5' |
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28534 | 3' | -54.8 | NC_005946.1 | + | 44783 | 0.69 | 0.735077 |
Target: 5'- cGUugGGGGCCAc-GGC--CAAGAGGu -3' miRNA: 3'- aCAugCCUCGGUacCCGcaGUUCUCC- -5' |
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28534 | 3' | -54.8 | NC_005946.1 | + | 83736 | 0.72 | 0.599694 |
Target: 5'- --cACGuGGCCGUGGGCG-CGGGuGGg -3' miRNA: 3'- acaUGCcUCGGUACCCGCaGUUCuCC- -5' |
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28534 | 3' | -54.8 | NC_005946.1 | + | 73338 | 0.74 | 0.47761 |
Target: 5'- -cUGCGGAGCaccugGGGUggaugGUCAAGAGGa -3' miRNA: 3'- acAUGCCUCGgua--CCCG-----CAGUUCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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