miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28535 5' -54.2 NC_005946.1 + 48171 0.66 0.911957
Target:  5'- -aGCuCUG-CUCCCCUCAgGAucacGGGCAu -3'
miRNA:   3'- acUG-GACuGAGGGGAGUaCUu---CCUGU- -5'
28535 5' -54.2 NC_005946.1 + 59314 0.66 0.911957
Target:  5'- gUGACCUugGAUUUgcaggagaCCCUCAUGucuguGGACAu -3'
miRNA:   3'- -ACUGGA--CUGAG--------GGGAGUACuu---CCUGU- -5'
28535 5' -54.2 NC_005946.1 + 22284 0.67 0.870213
Target:  5'- gGGcCCUGAacacgggccCUCCCCUCuUGAuGGGCc -3'
miRNA:   3'- aCU-GGACU---------GAGGGGAGuACUuCCUGu -5'
28535 5' -54.2 NC_005946.1 + 66764 0.67 0.854387
Target:  5'- aGugCUGGCUUCCaauguUGGAGGGCu -3'
miRNA:   3'- aCugGACUGAGGGgagu-ACUUCCUGu -5'
28535 5' -54.2 NC_005946.1 + 69035 0.67 0.846142
Target:  5'- gGGCaUGACUCCCUUUuuuGUGgcGGGCu -3'
miRNA:   3'- aCUGgACUGAGGGGAG---UACuuCCUGu -5'
28535 5' -54.2 NC_005946.1 + 3696 0.67 0.837686
Target:  5'- -cACCUGcCUCCUCUCcGUGAggAGGAUg -3'
miRNA:   3'- acUGGACuGAGGGGAG-UACU--UCCUGu -5'
28535 5' -54.2 NC_005946.1 + 98142 0.67 0.837686
Target:  5'- aUGGCCUGuCUCUCgUCcccgGUGAugAGGGCGa -3'
miRNA:   3'- -ACUGGACuGAGGGgAG----UACU--UCCUGU- -5'
28535 5' -54.2 NC_005946.1 + 62695 0.68 0.82815
Target:  5'- -aGCCUGACgcacacgagcucgUCgCCgucCAUGAAGGACAc -3'
miRNA:   3'- acUGGACUG-------------AGgGGa--GUACUUCCUGU- -5'
28535 5' -54.2 NC_005946.1 + 52202 0.68 0.811135
Target:  5'- aGACCaGGCUCCUCUCuucaguccuGAGGAUAa -3'
miRNA:   3'- aCUGGaCUGAGGGGAGuac------UUCCUGU- -5'
28535 5' -54.2 NC_005946.1 + 24118 0.69 0.782997
Target:  5'- cGaACCUGcCUCCCCUCAcGAc-GACAg -3'
miRNA:   3'- aC-UGGACuGAGGGGAGUaCUucCUGU- -5'
28535 5' -54.2 NC_005946.1 + 59487 0.72 0.606703
Target:  5'- aGGCCuUGGCgucUCCCCUCugcuUGAucuGGGACAc -3'
miRNA:   3'- aCUGG-ACUG---AGGGGAGu---ACU---UCCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.