miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
28536	5'	-59.7	NC_005946.1	+	22560	0.66	0.662591
	Target:  5'- aGGACCAGU--CUGACCACgGCgaccguaucGGAg -3' miRNA:   3'- -CCUGGUCGagGACUGGUGgCGac-------CCU- -5'
28536	5'	-59.7	NC_005946.1	+	62829	0.66	0.642202
	Target:  5'- cGACCGGCUCCUcACagcCCGUcaUGGGc -3' miRNA:   3'- cCUGGUCGAGGAcUGgu-GGCG--ACCCu -5'
28536	5'	-59.7	NC_005946.1	+	42992	0.67	0.621781
	Target:  5'- uGGCCAGcCUCUugcgaccgucguUGACCGCCuuGCUGGa- -3' miRNA:   3'- cCUGGUC-GAGG------------ACUGGUGG--CGACCcu -5'
28536	5'	-59.7	NC_005946.1	+	97876	0.67	0.581092
	Target:  5'- aGGACCcuGGCuccgUCCUGGCCugUgGCcGGGGc -3' miRNA:   3'- -CCUGG--UCG----AGGACUGGugG-CGaCCCU- -5'
28536	5'	-59.7	NC_005946.1	+	98367	0.68	0.560938
	Target:  5'- aGGGCUGGCUCCagGACCguguuGCCGaCUcccacgacGGGAg -3' miRNA:   3'- -CCUGGUCGAGGa-CUGG-----UGGC-GA--------CCCU- -5'
28536	5'	-59.7	NC_005946.1	+	48503	0.68	0.540981
	Target:  5'- uGGAcCCAGuCUCCUGACCcaggACCcucCUGaGGAa -3' miRNA:   3'- -CCU-GGUC-GAGGACUGG----UGGc--GAC-CCU- -5'
28536	5'	-59.7	NC_005946.1	+	19406	0.69	0.474254
	Target:  5'- cGGACCGGCguucacggcccugugCCUGcCUAUC-CUGGGAg -3' miRNA:   3'- -CCUGGUCGa--------------GGACuGGUGGcGACCCU- -5'
28536	5'	-59.7	NC_005946.1	+	25462	0.69	0.46399
	Target:  5'- cGACCAGCUCCUGGCCGaga-UGGc- -3' miRNA:   3'- cCUGGUCGAGGACUGGUggcgACCcu -5'
28536	5'	-59.7	NC_005946.1	+	8195	0.71	0.401588
	Target:  5'- aGGACCGGCaUCCuggucaUGACCAgCCucCUGGGGu -3' miRNA:   3'- -CCUGGUCG-AGG------ACUGGU-GGc-GACCCU- -5'
28536	5'	-59.7	NC_005946.1	+	22161	0.76	0.17663
	Target:  5'- cGGCC-GCUCCccUGACCGCCGCagcGGGAa -3' miRNA:   3'- cCUGGuCGAGG--ACUGGUGGCGa--CCCU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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