miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28538 3' -58.5 NC_005946.1 + 23369 0.66 0.712058
Target:  5'- -aGACGGcGGCugacccCAGC-CAcCCUCCCUu -3'
miRNA:   3'- gaCUGCCaCCG------GUCGuGUuGGAGGGA- -5'
28538 3' -58.5 NC_005946.1 + 39829 0.66 0.691708
Target:  5'- uCUGGCuaUGGCCgcGGCugcgGCGGCCUCUCUg -3'
miRNA:   3'- -GACUGccACCGG--UCG----UGUUGGAGGGA- -5'
28538 3' -58.5 NC_005946.1 + 76688 0.66 0.681451
Target:  5'- ---cUGGUGGguCCAGCAUGACC-CCCg -3'
miRNA:   3'- gacuGCCACC--GGUCGUGUUGGaGGGa -5'
28538 3' -58.5 NC_005946.1 + 98087 0.67 0.650468
Target:  5'- -cGACGGU-GUCGGgGaGACCUCCCg -3'
miRNA:   3'- gaCUGCCAcCGGUCgUgUUGGAGGGa -5'
28538 3' -58.5 NC_005946.1 + 49533 0.67 0.629722
Target:  5'- cCUGACGGacucuugGGU--GCACGAucCCUCCCUg -3'
miRNA:   3'- -GACUGCCa------CCGguCGUGUU--GGAGGGA- -5'
28538 3' -58.5 NC_005946.1 + 83452 0.68 0.598638
Target:  5'- aUGAgcugGGUGGUguGCACGGCCaucaCCCUg -3'
miRNA:   3'- gACUg---CCACCGguCGUGUUGGa---GGGA- -5'
28538 3' -58.5 NC_005946.1 + 45095 0.68 0.578029
Target:  5'- uUGAgGGacUGGCCcuGGCACAggugccucuGCCUCUCUg -3'
miRNA:   3'- gACUgCC--ACCGG--UCGUGU---------UGGAGGGA- -5'
28538 3' -58.5 NC_005946.1 + 88337 0.68 0.578029
Target:  5'- -aGGCGGccgGGCaGGCACugGACCUCCUc -3'
miRNA:   3'- gaCUGCCa--CCGgUCGUG--UUGGAGGGa -5'
28538 3' -58.5 NC_005946.1 + 48453 0.69 0.547429
Target:  5'- uCUGGCaGGgguucGGCCuGCAUGACCcccUCCCUg -3'
miRNA:   3'- -GACUG-CCa----CCGGuCGUGUUGG---AGGGA- -5'
28538 3' -58.5 NC_005946.1 + 8413 0.69 0.507481
Target:  5'- -gGuuGGUGGCguGCAUGACCUugCCCUu -3'
miRNA:   3'- gaCugCCACCGguCGUGUUGGA--GGGA- -5'
28538 3' -58.5 NC_005946.1 + 41607 0.71 0.422727
Target:  5'- -cGACGG-GGCCGGCGgGACCagaaggaCCCa -3'
miRNA:   3'- gaCUGCCaCCGGUCGUgUUGGa------GGGa -5'
28538 3' -58.5 NC_005946.1 + 62791 0.71 0.422727
Target:  5'- aUGGCccuGUaGGCCAGgGCAGCCUUCCa -3'
miRNA:   3'- gACUGc--CA-CCGGUCgUGUUGGAGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.