miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28538 5' -63.6 NC_005946.1 + 14890 0.66 0.535543
Target:  5'- gCUAuGGGAGAcggaGCCCuCGCCgCCgaguacuuuuuCUCGGUCc -3'
miRNA:   3'- -GGU-CCCUCU----UGGG-GCGG-GG-----------GAGCCGG- -5'
28538 5' -63.6 NC_005946.1 + 27457 0.66 0.535543
Target:  5'- -gAGGagccuccuGAGGGgCCCGCCC--UCGGCCg -3'
miRNA:   3'- ggUCC--------CUCUUgGGGCGGGggAGCCGG- -5'
28538 5' -63.6 NC_005946.1 + 8747 0.66 0.535543
Target:  5'- cCCAgGGGAGAuccguCCgCCGUCUCCaugUGGUCc -3'
miRNA:   3'- -GGU-CCCUCUu----GG-GGCGGGGGa--GCCGG- -5'
28538 5' -63.6 NC_005946.1 + 36836 0.66 0.535543
Target:  5'- uCCuGGGAGGuucuCCCC-CagagaCCC-CGGCCc -3'
miRNA:   3'- -GGuCCCUCUu---GGGGcGg----GGGaGCCGG- -5'
28538 5' -63.6 NC_005946.1 + 28658 0.66 0.523212
Target:  5'- gCCAGGGGGGccgucaGCCUgucgaGCUUCCucgugauguccgugUCGGCCg -3'
miRNA:   3'- -GGUCCCUCU------UGGGg----CGGGGG--------------AGCCGG- -5'
28538 5' -63.6 NC_005946.1 + 68565 0.66 0.516618
Target:  5'- gUCAGacacuGGAGggUCCUGgCCCCagGGCa -3'
miRNA:   3'- -GGUC-----CCUCuuGGGGCgGGGGagCCGg -5'
28538 5' -63.6 NC_005946.1 + 79102 0.66 0.508189
Target:  5'- aCAGGGcacacAGAACCCCcaggaacacuccgaCCCUggCGGCCu -3'
miRNA:   3'- gGUCCC-----UCUUGGGGcg------------GGGGa-GCCGG- -5'
28538 5' -63.6 NC_005946.1 + 69621 0.66 0.507255
Target:  5'- cCCAGGGGu--CCCUGUCCUCcaggagGGCCu -3'
miRNA:   3'- -GGUCCCUcuuGGGGCGGGGGag----CCGG- -5'
28538 5' -63.6 NC_005946.1 + 28919 0.66 0.488754
Target:  5'- uCCAGGcacuuGAcgaCCUGCCCUUUCGGUCu -3'
miRNA:   3'- -GGUCCcu---CUug-GGGCGGGGGAGCCGG- -5'
28538 5' -63.6 NC_005946.1 + 61600 0.66 0.488754
Target:  5'- aCAGGGucGACCCCagGCCCCacgaGGUg -3'
miRNA:   3'- gGUCCCucUUGGGG--CGGGGgag-CCGg -5'
28538 5' -63.6 NC_005946.1 + 73925 0.66 0.488754
Target:  5'- uCCGGGaGAGuGCCCCuCCgaCCC-CGGCg -3'
miRNA:   3'- -GGUCC-CUCuUGGGGcGG--GGGaGCCGg -5'
28538 5' -63.6 NC_005946.1 + 86517 0.66 0.488754
Target:  5'- uCCAGGGAGAGguUCCUGgaCUCCaggaCGGCUg -3'
miRNA:   3'- -GGUCCCUCUU--GGGGCg-GGGGa---GCCGG- -5'
28538 5' -63.6 NC_005946.1 + 41605 0.66 0.486006
Target:  5'- aCGGGGccggcgggaccagaAGGACCCa--CCCCUCcGCCg -3'
miRNA:   3'- gGUCCC--------------UCUUGGGgcgGGGGAGcCGG- -5'
28538 5' -63.6 NC_005946.1 + 75120 0.66 0.484178
Target:  5'- aCCuGGGAGccACCCUGCCguagaggCCCgggggcaucuuaaCGGCCa -3'
miRNA:   3'- -GGuCCCUCu-UGGGGCGG-------GGGa------------GCCGG- -5'
28538 5' -63.6 NC_005946.1 + 34100 0.67 0.470575
Target:  5'- aCAGGGccguAGCCCUgaaGCUCCCU-GGCCc -3'
miRNA:   3'- gGUCCCuc--UUGGGG---CGGGGGAgCCGG- -5'
28538 5' -63.6 NC_005946.1 + 9639 0.67 0.470575
Target:  5'- aCAGGGccacAGAcACCCCGUCCUCgucaUCcGCCg -3'
miRNA:   3'- gGUCCC----UCU-UGGGGCGGGGG----AGcCGG- -5'
28538 5' -63.6 NC_005946.1 + 74112 0.67 0.461615
Target:  5'- cCCuGGGAGAAgCUCaCCCCagcgaUGGCCa -3'
miRNA:   3'- -GGuCCCUCUUgGGGcGGGGga---GCCGG- -5'
28538 5' -63.6 NC_005946.1 + 34562 0.67 0.461615
Target:  5'- gCCAGGGccu-UCCUGUCCCUccaGGCCg -3'
miRNA:   3'- -GGUCCCucuuGGGGCGGGGGag-CCGG- -5'
28538 5' -63.6 NC_005946.1 + 74196 0.67 0.452746
Target:  5'- gCCAGGGAGAAaCCCGUCagCgUCaagGGCUa -3'
miRNA:   3'- -GGUCCCUCUUgGGGCGGg-GgAG---CCGG- -5'
28538 5' -63.6 NC_005946.1 + 72815 0.67 0.452746
Target:  5'- cCCAGGGAGguuGugCUgGCCaCCgUCaGGCUg -3'
miRNA:   3'- -GGUCCCUC---UugGGgCGG-GGgAG-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.