miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28539 5' -53 NC_005946.1 + 88315 0.66 0.938703
Target:  5'- cCUC-CUCAGGcgcGAGGGgCAcuUUAGGGAg -3'
miRNA:   3'- -GAGuGAGUCUa--CUUCCgGU--AGUCCCU- -5'
28539 5' -53 NC_005946.1 + 78982 0.66 0.938703
Target:  5'- -aCGC-CAGGgccGggGGCCA-CAGGGc -3'
miRNA:   3'- gaGUGaGUCUa--CuuCCGGUaGUCCCu -5'
28539 5' -53 NC_005946.1 + 61199 0.66 0.933558
Target:  5'- --uGCcugggCAGGcUGAGGGCCAaCGGGGGg -3'
miRNA:   3'- gagUGa----GUCU-ACUUCCGGUaGUCCCU- -5'
28539 5' -53 NC_005946.1 + 24784 0.67 0.910328
Target:  5'- -cCAgUCAGGUGAGGGuCCAUcCAGuGAg -3'
miRNA:   3'- gaGUgAGUCUACUUCC-GGUA-GUCcCU- -5'
28539 5' -53 NC_005946.1 + 52369 0.67 0.882923
Target:  5'- --gGC-CAGAgaGAGGGCCggCGGGGAc -3'
miRNA:   3'- gagUGaGUCUa-CUUCCGGuaGUCCCU- -5'
28539 5' -53 NC_005946.1 + 21082 0.67 0.882923
Target:  5'- -cCGCcaCAGggGcAAGGCCAUgAGGGAc -3'
miRNA:   3'- gaGUGa-GUCuaC-UUCCGGUAgUCCCU- -5'
28539 5' -53 NC_005946.1 + 30020 0.67 0.881447
Target:  5'- gCUCAUccuugaugUCAGAgacuuuuuuGGCCGUCAGGGu -3'
miRNA:   3'- -GAGUG--------AGUCUacuu-----CCGGUAGUCCCu -5'
28539 5' -53 NC_005946.1 + 4293 0.68 0.87084
Target:  5'- -aCACa-GGGUGGguguggaaggacacgAGGCCGUCGGGGGc -3'
miRNA:   3'- gaGUGagUCUACU---------------UCCGGUAGUCCCU- -5'
28539 5' -53 NC_005946.1 + 48916 0.69 0.825743
Target:  5'- -cCAgUCGGAUGGAGGC-GUCAugacGGGAa -3'
miRNA:   3'- gaGUgAGUCUACUUCCGgUAGU----CCCU- -5'
28539 5' -53 NC_005946.1 + 14188 0.7 0.748969
Target:  5'- -cCAC-CAuGAgcgcGGAGGCCAUCAGGGc -3'
miRNA:   3'- gaGUGaGU-CUa---CUUCCGGUAGUCCCu -5'
28539 5' -53 NC_005946.1 + 82927 0.71 0.707514
Target:  5'- gCUUACUcCAGGcacagGGAGGCCuUCAGGGc -3'
miRNA:   3'- -GAGUGA-GUCUa----CUUCCGGuAGUCCCu -5'
28539 5' -53 NC_005946.1 + 19720 0.71 0.686319
Target:  5'- gUCAagaAGAUGAGGGUCAagGGGGAg -3'
miRNA:   3'- gAGUgagUCUACUUCCGGUagUCCCU- -5'
28539 5' -53 NC_005946.1 + 85023 0.81 0.24113
Target:  5'- cCUCAUgggCAuGAUGGAGGgCAUCAGGGAg -3'
miRNA:   3'- -GAGUGa--GU-CUACUUCCgGUAGUCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.