miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28540 5' -64.3 NC_005946.1 + 22191 0.66 0.458728
Target:  5'- cGGCuacccucGGGcUGGCUgCCCuGGcCgCGGCCg -3'
miRNA:   3'- -CCGu------CCC-ACCGA-GGGuCCaG-GCCGGa -5'
28540 5' -64.3 NC_005946.1 + 72838 0.66 0.457829
Target:  5'- gGGCGGGGUucucccuGGagacaCCCAGGgagguugugCUGGCCa -3'
miRNA:   3'- -CCGUCCCA-------CCga---GGGUCCa--------GGCCGGa -5'
28540 5' -64.3 NC_005946.1 + 21843 0.66 0.449788
Target:  5'- gGGCAgGGGUGGCacacugcCgCCAGGg-UGGCCg -3'
miRNA:   3'- -CCGU-CCCACCGa------G-GGUCCagGCCGGa -5'
28540 5' -64.3 NC_005946.1 + 24702 0.66 0.440945
Target:  5'- uGGgGGGGuUGGg-CCCGGGUggGGCCUc -3'
miRNA:   3'- -CCgUCCC-ACCgaGGGUCCAggCCGGA- -5'
28540 5' -64.3 NC_005946.1 + 8329 0.66 0.432202
Target:  5'- cGGCGGGGUuaucgGGCUCCaGGGccuuuauccUCUGGUUUa -3'
miRNA:   3'- -CCGUCCCA-----CCGAGGgUCC---------AGGCCGGA- -5'
28540 5' -64.3 NC_005946.1 + 61276 0.66 0.415024
Target:  5'- aGGCGGGGacggGGUUCgacgCCugcgagAGGaCCGGCCUg -3'
miRNA:   3'- -CCGUCCCa---CCGAG----GG------UCCaGGCCGGA- -5'
28540 5' -64.3 NC_005946.1 + 79449 0.67 0.373972
Target:  5'- gGGCcGGGUGgacGCUCCUGGG-CUGGaCCa -3'
miRNA:   3'- -CCGuCCCAC---CGAGGGUCCaGGCC-GGa -5'
28540 5' -64.3 NC_005946.1 + 35334 0.67 0.366098
Target:  5'- cGGCAGcGU--CUCCCAGGUCCcaucccagggaGGCCg -3'
miRNA:   3'- -CCGUCcCAccGAGGGUCCAGG-----------CCGGa -5'
28540 5' -64.3 NC_005946.1 + 33138 0.68 0.335762
Target:  5'- uGGgAGGGUagacGGCcacauucacCCCAGaGUCUGGCCUc -3'
miRNA:   3'- -CCgUCCCA----CCGa--------GGGUC-CAGGCCGGA- -5'
28540 5' -64.3 NC_005946.1 + 84114 0.68 0.313541
Target:  5'- uGGUGGGGUGGUUCUgccacguCAGGUgCgucaaGGCCUa -3'
miRNA:   3'- -CCGUCCCACCGAGG-------GUCCAgG-----CCGGA- -5'
28540 5' -64.3 NC_005946.1 + 36263 0.69 0.280723
Target:  5'- cGGCGGcGGUGGCgggUCUGGGgggagCGGCCUu -3'
miRNA:   3'- -CCGUC-CCACCGa--GGGUCCag---GCCGGA- -5'
28540 5' -64.3 NC_005946.1 + 43680 0.72 0.197172
Target:  5'- cGGcCAGGGUcccguagagGGaC-CCCAGGUCCGaGCCg -3'
miRNA:   3'- -CC-GUCCCA---------CC-GaGGGUCCAGGC-CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.