miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28541 3' -55.3 NC_005946.1 + 56445 0.66 0.891675
Target:  5'- cUCUGGAGUCgauggggugcuCAugGGCucCAGGaGCCu -3'
miRNA:   3'- aGGACCUCAG-----------GUugCUGuaGUCC-CGG- -5'
28541 3' -55.3 NC_005946.1 + 78998 0.66 0.884693
Target:  5'- gCCacGGAGg-CGGCGuACGcCAGGGCCg -3'
miRNA:   3'- aGGa-CCUCagGUUGC-UGUaGUCCCGG- -5'
28541 3' -55.3 NC_005946.1 + 21861 0.66 0.884693
Target:  5'- cCCUucaaGGAGUCCAugGGg--CAGGGgUg -3'
miRNA:   3'- aGGA----CCUCAGGUugCUguaGUCCCgG- -5'
28541 3' -55.3 NC_005946.1 + 3776 0.66 0.877476
Target:  5'- cCCaGGAcagucuuaaaGUCCGAgGGgGaCAGGGCCa -3'
miRNA:   3'- aGGaCCU----------CAGGUUgCUgUaGUCCCGG- -5'
28541 3' -55.3 NC_005946.1 + 42224 0.66 0.870029
Target:  5'- aUCC-GGAcccuucacgccGUCCAcuACGAUGUCuggacccuGGGGCCa -3'
miRNA:   3'- -AGGaCCU-----------CAGGU--UGCUGUAG--------UCCCGG- -5'
28541 3' -55.3 NC_005946.1 + 40141 0.66 0.870029
Target:  5'- -gCUGGAGaggcucUCCGGCgGGCAUaaacagagGGGGCCu -3'
miRNA:   3'- agGACCUC------AGGUUG-CUGUAg-------UCCCGG- -5'
28541 3' -55.3 NC_005946.1 + 86505 0.66 0.869272
Target:  5'- uUCCUGGAcUCCAggACGGCugccgugugccucAUCuuGGCCu -3'
miRNA:   3'- -AGGACCUcAGGU--UGCUG-------------UAGucCCGG- -5'
28541 3' -55.3 NC_005946.1 + 86357 0.66 0.862358
Target:  5'- cCCUGGGGacguugaCCAggcAUGGCuuaGGGGCCg -3'
miRNA:   3'- aGGACCUCa------GGU---UGCUGuagUCCCGG- -5'
28541 3' -55.3 NC_005946.1 + 68774 0.66 0.854469
Target:  5'- uUCCUGGGGU-CGugGACGcaguUCAGguGGUCc -3'
miRNA:   3'- -AGGACCUCAgGUugCUGU----AGUC--CCGG- -5'
28541 3' -55.3 NC_005946.1 + 79500 0.67 0.846368
Target:  5'- gCCUGGAGggcCUGACGGCcgagCuGGuGCCa -3'
miRNA:   3'- aGGACCUCa--GGUUGCUGua--GuCC-CGG- -5'
28541 3' -55.3 NC_005946.1 + 102330 0.67 0.826975
Target:  5'- gCCgUGGAgGUCCGuguagaccacguccACGcCGUgCAGGGCCc -3'
miRNA:   3'- aGG-ACCU-CAGGU--------------UGCuGUA-GUCCCGG- -5'
28541 3' -55.3 NC_005946.1 + 34149 0.67 0.8235
Target:  5'- aCCguUGaGAGUCCAccugucgacgggcAUGACGUCcguccuccuguuuacAGGGCCg -3'
miRNA:   3'- aGG--AC-CUCAGGU-------------UGCUGUAG---------------UCCCGG- -5'
28541 3' -55.3 NC_005946.1 + 14581 0.67 0.820873
Target:  5'- gCCUGGcGUCgGACGuugcCAUgaggAGGGCCg -3'
miRNA:   3'- aGGACCuCAGgUUGCu---GUAg---UCCCGG- -5'
28541 3' -55.3 NC_005946.1 + 49606 0.67 0.812004
Target:  5'- aCCUGGGGUUaaaGACcuuCAUCccguccAGGGCCc -3'
miRNA:   3'- aGGACCUCAGg--UUGcu-GUAG------UCCCGG- -5'
28541 3' -55.3 NC_005946.1 + 75183 0.67 0.800218
Target:  5'- cCCUguagucGGGGUCCAccaccccggcacCGACGucuauaaauuuuuUCAGGGCCa -3'
miRNA:   3'- aGGA------CCUCAGGUu-----------GCUGU-------------AGUCCCGG- -5'
28541 3' -55.3 NC_005946.1 + 18008 0.68 0.793759
Target:  5'- cUCUUGGAGUCgAGaagGGCcuugAUCAGGGUg -3'
miRNA:   3'- -AGGACCUCAGgUUg--CUG----UAGUCCCGg -5'
28541 3' -55.3 NC_005946.1 + 3048 0.68 0.755509
Target:  5'- -gCUGGAGUCuCAGacacCGACGUCGucccGGCCu -3'
miRNA:   3'- agGACCUCAG-GUU----GCUGUAGUc---CCGG- -5'
28541 3' -55.3 NC_005946.1 + 49676 0.68 0.755509
Target:  5'- cUCCUGGcGGUCUuu--ACGUCGGGGaCCu -3'
miRNA:   3'- -AGGACC-UCAGGuugcUGUAGUCCC-GG- -5'
28541 3' -55.3 NC_005946.1 + 35823 0.68 0.755509
Target:  5'- -gCUGGGGUCCcacuACGGC--CAGGuGCCc -3'
miRNA:   3'- agGACCUCAGGu---UGCUGuaGUCC-CGG- -5'
28541 3' -55.3 NC_005946.1 + 82993 0.69 0.745637
Target:  5'- ---gGGAGUCC-ACGGCAU-GGGGUCc -3'
miRNA:   3'- aggaCCUCAGGuUGCUGUAgUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.