miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28542 3' -55.2 NC_005946.1 + 28566 0.66 0.882439
Target:  5'- aGUCACaaaGGUGGACuCGAAGGGgacgaCCc -3'
miRNA:   3'- aCAGUGgc-CUACCUG-GUUUCCCa----GGu -5'
28542 3' -55.2 NC_005946.1 + 26646 0.66 0.875107
Target:  5'- cGUaCACCaGccaggGGACCGugcagcucaGGGGGUCCAg -3'
miRNA:   3'- aCA-GUGGcCua---CCUGGU---------UUCCCAGGU- -5'
28542 3' -55.2 NC_005946.1 + 98553 0.66 0.859756
Target:  5'- gUGgauCCGGAUGGGu--GGGGGUCCu -3'
miRNA:   3'- -ACaguGGCCUACCUgguUUCCCAGGu -5'
28542 3' -55.2 NC_005946.1 + 42863 0.66 0.851749
Target:  5'- --aCACCGGGaucgagUGGAUCAGAGucucGUCCAa -3'
miRNA:   3'- acaGUGGCCU------ACCUGGUUUCc---CAGGU- -5'
28542 3' -55.2 NC_005946.1 + 102193 0.67 0.817688
Target:  5'- cGUCugCGuaggGGAacCCGAAGGcGUCCAg -3'
miRNA:   3'- aCAGugGCcua-CCU--GGUUUCC-CAGGU- -5'
28542 3' -55.2 NC_005946.1 + 68285 0.67 0.79955
Target:  5'- aUGUCugCGGcgGuGAC---GGGGUCCu -3'
miRNA:   3'- -ACAGugGCCuaC-CUGguuUCCCAGGu -5'
28542 3' -55.2 NC_005946.1 + 3460 0.67 0.79955
Target:  5'- --aCACCGGGgcgGGugU-AGGGGUCUAc -3'
miRNA:   3'- acaGUGGCCUa--CCugGuUUCCCAGGU- -5'
28542 3' -55.2 NC_005946.1 + 76322 0.68 0.790234
Target:  5'- cGUgGgaGGuaugGGGCCAGAGGGcCCAa -3'
miRNA:   3'- aCAgUggCCua--CCUGGUUUCCCaGGU- -5'
28542 3' -55.2 NC_005946.1 + 4216 0.69 0.7305
Target:  5'- cUGUCAaacaCGGAcacuccuacggcUGGAaccuuccCCAGGGGGUCCu -3'
miRNA:   3'- -ACAGUg---GCCU------------ACCU-------GGUUUCCCAGGu -5'
28542 3' -55.2 NC_005946.1 + 36613 0.69 0.721347
Target:  5'- cGUCucccauGCCGaGUGGACCGccaccGGGUCCGa -3'
miRNA:   3'- aCAG------UGGCcUACCUGGUuu---CCCAGGU- -5'
28542 3' -55.2 NC_005946.1 + 103100 0.7 0.679972
Target:  5'- --cCGCCGGGacccaggGGAgaGAAGGGUCCAa -3'
miRNA:   3'- acaGUGGCCUa------CCUggUUUCCCAGGU- -5'
28542 3' -55.2 NC_005946.1 + 3095 0.7 0.648466
Target:  5'- gUGUCGCUGuGA-GGACCaAGAGGGgggCCu -3'
miRNA:   3'- -ACAGUGGC-CUaCCUGG-UUUCCCa--GGu -5'
28542 3' -55.2 NC_005946.1 + 14425 0.71 0.627378
Target:  5'- gUGUgGCCGaGA-GGGCCAAggaaaAGGGUCUg -3'
miRNA:   3'- -ACAgUGGC-CUaCCUGGUU-----UCCCAGGu -5'
28542 3' -55.2 NC_005946.1 + 72554 0.72 0.554113
Target:  5'- --gUACUGGAcccagaggGGAUCAGGGGGUCCGg -3'
miRNA:   3'- acaGUGGCCUa-------CCUGGUUUCCCAGGU- -5'
28542 3' -55.2 NC_005946.1 + 41967 0.87 0.074074
Target:  5'- aGUCcCCGGGUGGACCcGGGGGUCCc -3'
miRNA:   3'- aCAGuGGCCUACCUGGuUUCCCAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.