miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28542 5' -62.9 NC_005946.1 + 43926 0.66 0.505506
Target:  5'- cGCUGGgucCCCUCacGUcgUCCCaguGGCCCg -3'
miRNA:   3'- -CGACCa--GGGAGa-CG--AGGGgacCCGGG- -5'
28542 5' -62.9 NC_005946.1 + 68473 0.66 0.485766
Target:  5'- cUUGGgaguagaUCCUgaUCUGCUgCCCCUGGGUa- -3'
miRNA:   3'- cGACC-------AGGG--AGACGA-GGGGACCCGgg -5'
28542 5' -62.9 NC_005946.1 + 12732 0.67 0.468229
Target:  5'- gGCUGGagCUgUCUGCUCCCUacGGUUCc -3'
miRNA:   3'- -CGACCa-GGgAGACGAGGGGacCCGGG- -5'
28542 5' -62.9 NC_005946.1 + 44728 0.67 0.459129
Target:  5'- --cGGUgCCUCUcccCUCUCCUuggcuaGGGCCCu -3'
miRNA:   3'- cgaCCAgGGAGAc--GAGGGGA------CCCGGG- -5'
28542 5' -62.9 NC_005946.1 + 49464 0.67 0.432414
Target:  5'- cCUGG-CCUUCUucucgGCUCCCgUgaaccccuccaGGGCCCu -3'
miRNA:   3'- cGACCaGGGAGA-----CGAGGGgA-----------CCCGGG- -5'
28542 5' -62.9 NC_005946.1 + 41948 0.67 0.423712
Target:  5'- --gGGUCCCUUgucgcccuuugGC-CCUCUGGGgCCa -3'
miRNA:   3'- cgaCCAGGGAGa----------CGaGGGGACCCgGG- -5'
28542 5' -62.9 NC_005946.1 + 10635 0.68 0.415116
Target:  5'- --aGGUCCCUCaccucaUCCCCgggaguggagGGGUCCa -3'
miRNA:   3'- cgaCCAGGGAGacg---AGGGGa---------CCCGGG- -5'
28542 5' -62.9 NC_005946.1 + 86654 0.68 0.406628
Target:  5'- uGCUGGUCCUgaggaccCUGCaguccgagauuaUCCCCUccaGGUCCu -3'
miRNA:   3'- -CGACCAGGGa------GACG------------AGGGGAc--CCGGG- -5'
28542 5' -62.9 NC_005946.1 + 65133 0.68 0.389983
Target:  5'- aGCUGGgCCUUUaUGUUCCUcacgugCUGGGCCUc -3'
miRNA:   3'- -CGACCaGGGAG-ACGAGGG------GACCCGGG- -5'
28542 5' -62.9 NC_005946.1 + 9775 0.7 0.30811
Target:  5'- uGCUGG-CCCaguagccccgcuaUCUGCgucagguuaaacaugUCCCCcuuggacUGGGCCCu -3'
miRNA:   3'- -CGACCaGGG-------------AGACG---------------AGGGG-------ACCCGGG- -5'
28542 5' -62.9 NC_005946.1 + 64815 0.71 0.27363
Target:  5'- aGUUGcUCCCUUgucgCCCCUGGGUCCc -3'
miRNA:   3'- -CGACcAGGGAGacgaGGGGACCCGGG- -5'
28542 5' -62.9 NC_005946.1 + 41896 0.71 0.257582
Target:  5'- uCUGGUCCCUUuauaccaaagaUGCcuacacccccauuguUUCCCUGcGGCCCc -3'
miRNA:   3'- cGACCAGGGAG-----------ACG---------------AGGGGAC-CCGGG- -5'
28542 5' -62.9 NC_005946.1 + 79734 0.72 0.237768
Target:  5'- aCUGGUCCaacCUGCccaugauugUCCCgCUGaGGCCCg -3'
miRNA:   3'- cGACCAGGga-GACG---------AGGG-GAC-CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.