miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28544 5' -63.9 NC_005946.1 + 94434 0.66 0.509427
Target:  5'- gCC-GCCCUGGUGaGgGCCcuGCCUuCCGg -3'
miRNA:   3'- -GGcCGGGACCGCaUgCGG--CGGA-GGCa -5'
28544 5' -63.9 NC_005946.1 + 2250 0.66 0.49084
Target:  5'- cUCGGCCCacaggGGCcccgaccaggACGCCGCC-CUGg -3'
miRNA:   3'- -GGCCGGGa----CCGca--------UGCGGCGGaGGCa -5'
28544 5' -63.9 NC_005946.1 + 72735 0.66 0.481666
Target:  5'- gUGGUCC-GGCGcUGCGggguCCGCgUCCGUg -3'
miRNA:   3'- gGCCGGGaCCGC-AUGC----GGCGgAGGCA- -5'
28544 5' -63.9 NC_005946.1 + 79001 0.66 0.481666
Target:  5'- gCGGCCaCggaggcGGCGUACGCCaggGCCgggggCCa- -3'
miRNA:   3'- gGCCGG-Ga-----CCGCAUGCGG---CGGa----GGca -5'
28544 5' -63.9 NC_005946.1 + 86946 0.67 0.443213
Target:  5'- cUCGGgaaCCUGGCGUGguggagccacacucCGCCgaGCCUCCu- -3'
miRNA:   3'- -GGCCg--GGACCGCAU--------------GCGG--CGGAGGca -5'
28544 5' -63.9 NC_005946.1 + 66320 0.67 0.41997
Target:  5'- aCGuCUCUucGGCGUGCGCCGCCaugUCCc- -3'
miRNA:   3'- gGCcGGGA--CCGCAUGCGGCGG---AGGca -5'
28544 5' -63.9 NC_005946.1 + 67370 0.67 0.404064
Target:  5'- -gGGCCCUGGUcacggccugacaugACGCCGUCUCgaCGUa -3'
miRNA:   3'- ggCCGGGACCGca------------UGCGGCGGAG--GCA- -5'
28544 5' -63.9 NC_005946.1 + 10792 0.67 0.403237
Target:  5'- uUCGGCCaccGCGUACGCCaCgUCCGc -3'
miRNA:   3'- -GGCCGGgacCGCAUGCGGcGgAGGCa -5'
28544 5' -63.9 NC_005946.1 + 4174 0.68 0.363304
Target:  5'- -gGGuCCUUGGUGUAUGCCauaaccuggagGUCUCCGg -3'
miRNA:   3'- ggCC-GGGACCGCAUGCGG-----------CGGAGGCa -5'
28544 5' -63.9 NC_005946.1 + 94386 0.69 0.319122
Target:  5'- gCC-GCCCUGGCGUACacuGUgGCCagagCCGUc -3'
miRNA:   3'- -GGcCGGGACCGCAUG---CGgCGGa---GGCA- -5'
28544 5' -63.9 NC_005946.1 + 18158 0.69 0.312162
Target:  5'- uUCGGCCUUGGCcuugAC-CUGCCUCCuGUg -3'
miRNA:   3'- -GGCCGGGACCGca--UGcGGCGGAGG-CA- -5'
28544 5' -63.9 NC_005946.1 + 44541 0.7 0.272828
Target:  5'- aCGGCCCUGGCGgugugagGCGUCuugaggggaGCCUCg-- -3'
miRNA:   3'- gGCCGGGACCGCa------UGCGG---------CGGAGgca -5'
28544 5' -63.9 NC_005946.1 + 45088 0.72 0.201345
Target:  5'- aCUGGCCCUGGCacagGUGCcucugccucucuGCCGCCUgCCu- -3'
miRNA:   3'- -GGCCGGGACCG----CAUG------------CGGCGGA-GGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.