miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28547 5' -54.8 NC_005946.1 + 100043 0.66 0.878923
Target:  5'- -gACCACaaaCAGCUCGUCcaUGUCCUg-- -3'
miRNA:   3'- ugUGGUGg--GUCGAGUAG--AUAGGGugc -5'
28547 5' -54.8 NC_005946.1 + 104405 0.66 0.878923
Target:  5'- gGCGCagGCCCuGUU-GUCUAcUCCCACGg -3'
miRNA:   3'- -UGUGg-UGGGuCGAgUAGAU-AGGGUGC- -5'
28547 5' -54.8 NC_005946.1 + 10745 0.66 0.870668
Target:  5'- aGCACUugacgggAUCCAGCUCGaggcuugcagUCUuUCCCACc -3'
miRNA:   3'- -UGUGG-------UGGGUCGAGU----------AGAuAGGGUGc -5'
28547 5' -54.8 NC_005946.1 + 73240 0.67 0.839214
Target:  5'- gACGCCACCgGGCcccUCAUCgccuUCCUccuggACGg -3'
miRNA:   3'- -UGUGGUGGgUCG---AGUAGau--AGGG-----UGC- -5'
28547 5' -54.8 NC_005946.1 + 2225 0.67 0.830635
Target:  5'- gACGCCGCCCugGGCUCcuUCUGUaucaagaaCCC-CGg -3'
miRNA:   3'- -UGUGGUGGG--UCGAGu-AGAUA--------GGGuGC- -5'
28547 5' -54.8 NC_005946.1 + 41697 0.67 0.812902
Target:  5'- uGCcCCugucCCCGGCUCcccCUgaGUCCCACGg -3'
miRNA:   3'- -UGuGGu---GGGUCGAGua-GA--UAGGGUGC- -5'
28547 5' -54.8 NC_005946.1 + 60366 0.68 0.775396
Target:  5'- aGCGCCGcCCCAGC-CAcUCccgcUCCCACa -3'
miRNA:   3'- -UGUGGU-GGGUCGaGU-AGau--AGGGUGc -5'
28547 5' -54.8 NC_005946.1 + 39876 0.68 0.755776
Target:  5'- cGCACUGCa-GGCUCGUCguUCCCGCu -3'
miRNA:   3'- -UGUGGUGggUCGAGUAGauAGGGUGc -5'
28547 5' -54.8 NC_005946.1 + 29397 0.69 0.745785
Target:  5'- gACACaAUCCAGCUCGUCUGugagacUCUCAUu -3'
miRNA:   3'- -UGUGgUGGGUCGAGUAGAU------AGGGUGc -5'
28547 5' -54.8 NC_005946.1 + 11244 0.69 0.745785
Target:  5'- -gGCCGCCCuGCUCAgggGUCCgACc -3'
miRNA:   3'- ugUGGUGGGuCGAGUagaUAGGgUGc -5'
28547 5' -54.8 NC_005946.1 + 104639 0.71 0.620442
Target:  5'- gACugUACCCAGCcUAUCUGU-CCACu -3'
miRNA:   3'- -UGugGUGGGUCGaGUAGAUAgGGUGc -5'
28547 5' -54.8 NC_005946.1 + 40364 0.72 0.578167
Target:  5'- gACACCGCCgCGGCguaggaagaGUC-GUCCCACGc -3'
miRNA:   3'- -UGUGGUGG-GUCGag-------UAGaUAGGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.