Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28550 | 3' | -54.5 | NC_005946.1 | + | 64881 | 0.66 | 0.907517 |
Target: 5'- uUGCGGCUCCAAagauCCUCAUCccgucCUCc -3' miRNA: 3'- gAUGCCGAGGUU----GGGGUAGuuc--GAGc -5' |
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28550 | 3' | -54.5 | NC_005946.1 | + | 88754 | 0.66 | 0.887348 |
Target: 5'- aCUACGGCUCCAAgaaaucuuucucCUCCAUagcAGaCUCu -3' miRNA: 3'- -GAUGCCGAGGUU------------GGGGUAgu-UC-GAGc -5' |
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28550 | 3' | -54.5 | NC_005946.1 | + | 45284 | 0.66 | 0.880135 |
Target: 5'- uUACaGCUCUAACCCUGaCAGGCg-- -3' miRNA: 3'- gAUGcCGAGGUUGGGGUaGUUCGagc -5' |
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28550 | 3' | -54.5 | NC_005946.1 | + | 47081 | 0.66 | 0.880135 |
Target: 5'- -cACGGCcgCCGcaaACCCCAUCAuGCc-- -3' miRNA: 3'- gaUGCCGa-GGU---UGGGGUAGUuCGagc -5' |
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28550 | 3' | -54.5 | NC_005946.1 | + | 30480 | 0.67 | 0.832099 |
Target: 5'- cCUGCGGUUcagcucugccgCCAGCCCgGUCGcugcGCUCu -3' miRNA: 3'- -GAUGCCGA-----------GGUUGGGgUAGUu---CGAGc -5' |
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28550 | 3' | -54.5 | NC_005946.1 | + | 75002 | 0.68 | 0.814442 |
Target: 5'- -cGCGGCUCCAgcgcuGCCCCugAUgAGGC-Ca -3' miRNA: 3'- gaUGCCGAGGU-----UGGGG--UAgUUCGaGc -5' |
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28550 | 3' | -54.5 | NC_005946.1 | + | 72687 | 0.68 | 0.796074 |
Target: 5'- gUGCGGCgugaCGggugACCCCGUgGGGUUCGu -3' miRNA: 3'- gAUGCCGag--GU----UGGGGUAgUUCGAGC- -5' |
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28550 | 3' | -54.5 | NC_005946.1 | + | 99162 | 0.68 | 0.786647 |
Target: 5'- -gGC-GCUCCAagagGCCCUGUCGAuGCUCa -3' miRNA: 3'- gaUGcCGAGGU----UGGGGUAGUU-CGAGc -5' |
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28550 | 3' | -54.5 | NC_005946.1 | + | 50963 | 0.71 | 0.633001 |
Target: 5'- gCUACGGCUCCcGCCCCcucuacGUCuGGGUUUa -3' miRNA: 3'- -GAUGCCGAGGuUGGGG------UAG-UUCGAGc -5' |
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28550 | 3' | -54.5 | NC_005946.1 | + | 62826 | 0.71 | 0.611797 |
Target: 5'- --cCGGCUCCucacAgCCCGUCAugGGCUCa -3' miRNA: 3'- gauGCCGAGGu---UgGGGUAGU--UCGAGc -5' |
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28550 | 3' | -54.5 | NC_005946.1 | + | 43251 | 0.73 | 0.507964 |
Target: 5'- -gACGGCgUCCAGgCCCGUCAGGUa-- -3' miRNA: 3'- gaUGCCG-AGGUUgGGGUAGUUCGagc -5' |
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28550 | 3' | -54.5 | NC_005946.1 | + | 3264 | 0.82 | 0.168916 |
Target: 5'- -gGCGGCUcCCGACCCCAggcaccgcaacucuuUCAGGCUCu -3' miRNA: 3'- gaUGCCGA-GGUUGGGGU---------------AGUUCGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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