miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28552 3' -54.6 NC_005946.1 + 87061 0.66 0.900719
Target:  5'- --cCUUGCGCCaGC-ACCUCAgagGuCCc -3'
miRNA:   3'- ccuGAACGCGGcCGaUGGAGUa--CuGG- -5'
28552 3' -54.6 NC_005946.1 + 86493 0.66 0.900719
Target:  5'- aGGACg-GCuGCCGugUGCCUCAucuUGGCCu -3'
miRNA:   3'- -CCUGaaCG-CGGCcgAUGGAGU---ACUGG- -5'
28552 3' -54.6 NC_005946.1 + 7355 0.66 0.887121
Target:  5'- aGGAggUGCacGCCGGC-ACCUCucaGugCg -3'
miRNA:   3'- -CCUgaACG--CGGCCGaUGGAGua-CugG- -5'
28552 3' -54.6 NC_005946.1 + 72134 0.67 0.849063
Target:  5'- gGGGCcc-UGCCGGUggugGCCaUCAUGACg -3'
miRNA:   3'- -CCUGaacGCGGCCGa---UGG-AGUACUGg -5'
28552 3' -54.6 NC_005946.1 + 58107 0.68 0.832339
Target:  5'- aGGAgUggccgcgGCGCCGGgcaugcCUGCCcUCAaGACCu -3'
miRNA:   3'- -CCUgAa------CGCGGCC------GAUGG-AGUaCUGG- -5'
28552 3' -54.6 NC_005946.1 + 27920 0.69 0.787317
Target:  5'- -cGCUcuCGCCuGGCauccucuuggGCCUCAUGACCg -3'
miRNA:   3'- ccUGAacGCGG-CCGa---------UGGAGUACUGG- -5'
28552 3' -54.6 NC_005946.1 + 46235 0.71 0.623539
Target:  5'- uGGACUUuuaGgGCCgcGGCUACagucuucUUCAUGACCa -3'
miRNA:   3'- -CCUGAA---CgCGG--CCGAUG-------GAGUACUGG- -5'
28552 3' -54.6 NC_005946.1 + 8422 0.72 0.603585
Target:  5'- uGGGCUUGCgGuuGGUgGCgUgCAUGACCu -3'
miRNA:   3'- -CCUGAACG-CggCCGaUGgA-GUACUGG- -5'
28552 3' -54.6 NC_005946.1 + 22202 0.78 0.302477
Target:  5'- cGGACUaGCGgCGGCUACCcUCGggcuggcugcccUGGCCg -3'
miRNA:   3'- -CCUGAaCGCgGCCGAUGG-AGU------------ACUGG- -5'
28552 3' -54.6 NC_005946.1 + 17977 0.79 0.261727
Target:  5'- uGGACUUGCcggaccCCGGCUugCcUAUGACCa -3'
miRNA:   3'- -CCUGAACGc-----GGCCGAugGaGUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.