miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28552 5' -57.5 NC_005946.1 + 25787 0.71 0.478069
Target:  5'- cGGACC-CgGAGGUGgUGGaCGaCGAGGa -3'
miRNA:   3'- cCCUGGaGaCUCCACgACC-GC-GUUCC- -5'
28552 5' -57.5 NC_005946.1 + 48268 0.71 0.497329
Target:  5'- aGGGugCUg-GGGGUGCUugcaGGCGUAGGu -3'
miRNA:   3'- -CCCugGAgaCUCCACGA----CCGCGUUCc -5'
28552 5' -57.5 NC_005946.1 + 94699 0.7 0.567158
Target:  5'- gGGGGcCCUCaGAGGagGaUUGGCGuCGAGGa -3'
miRNA:   3'- -CCCU-GGAGaCUCCa-C-GACCGC-GUUCC- -5'
28552 5' -57.5 NC_005946.1 + 67932 0.68 0.658836
Target:  5'- aGGGACCUCucguUGGGGUacuGCUgcacGGCGUAgccccucucggccAGGa -3'
miRNA:   3'- -CCCUGGAG----ACUCCA---CGA----CCGCGU-------------UCC- -5'
28552 5' -57.5 NC_005946.1 + 12097 0.68 0.663989
Target:  5'- aGGGACuuaugccccacgcgaCUCUGAGGgagaugagggaGCUGGCGgAgcAGGa -3'
miRNA:   3'- -CCCUG---------------GAGACUCCa----------CGACCGCgU--UCC- -5'
28552 5' -57.5 NC_005946.1 + 56450 0.68 0.68043
Target:  5'- uGGACCUCUGgagucgaugGGGUGCUcaugGGCuCcAGGa -3'
miRNA:   3'- cCCUGGAGAC---------UCCACGA----CCGcGuUCC- -5'
28552 5' -57.5 NC_005946.1 + 13348 0.67 0.696767
Target:  5'- cGGGGCCUacauaucccugcugCUGggguccaGGGUGgUGGC-CGAGGg -3'
miRNA:   3'- -CCCUGGA--------------GAC-------UCCACgACCGcGUUCC- -5'
28552 5' -57.5 NC_005946.1 + 2284 0.67 0.700831
Target:  5'- cGGACCccgCcGGGG-GCUGGUGCAGa- -3'
miRNA:   3'- cCCUGGa--GaCUCCaCGACCGCGUUcc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.