miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28554 3' -48.6 NC_005946.1 + 97931 0.67 0.98768
Target:  5'- gGCCgCUgucucgGAGAagAAGaaUGGGAGGGGAAGa -3'
miRNA:   3'- -UGGaGAa-----CUCU--UUC--AUUCUCCCCUUU- -5'
28554 3' -48.6 NC_005946.1 + 57915 0.67 0.987514
Target:  5'- cACCUCUUGGcugccagggcccuGuuGGccGGGGGGGAGAg -3'
miRNA:   3'- -UGGAGAACU-------------CuuUCauUCUCCCCUUU- -5'
28554 3' -48.6 NC_005946.1 + 12706 0.69 0.960755
Target:  5'- uCCUCg-GAGGAGGggAGGuGGGGAGAc -3'
miRNA:   3'- uGGAGaaCUCUUUCa-UUCuCCCCUUU- -5'
28554 3' -48.6 NC_005946.1 + 58218 0.73 0.827298
Target:  5'- cACCUCUgGAGuguuuGUGAGGGGaGGAGAg -3'
miRNA:   3'- -UGGAGAaCUCuuu--CAUUCUCC-CCUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.