miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28555 5' -56 NC_005946.1 + 59982 0.66 0.851782
Target:  5'- cGGGGCCCgcguaaCCGUacgcggcccUGGGUCUCg- -3'
miRNA:   3'- aCCCUGGGaaaa--GGCG---------GCCUAGAGag -5'
28555 5' -56 NC_005946.1 + 65054 0.66 0.835217
Target:  5'- -cGGACUCgagcaggUCCGUCaGGAUcCUCUCg -3'
miRNA:   3'- acCCUGGGaaa----AGGCGG-CCUA-GAGAG- -5'
28555 5' -56 NC_005946.1 + 14626 0.66 0.817874
Target:  5'- aGGGcACCCUgcuggacgcUUUCC-CCGGAgagaCUUUCg -3'
miRNA:   3'- aCCC-UGGGA---------AAAGGcGGCCUa---GAGAG- -5'
28555 5' -56 NC_005946.1 + 39997 0.67 0.790552
Target:  5'- uUGGGGCUCUgcgaugucCCGuuGGggCUCUg -3'
miRNA:   3'- -ACCCUGGGAaaa-----GGCggCCuaGAGAg -5'
28555 5' -56 NC_005946.1 + 96650 0.67 0.781131
Target:  5'- cGGGGCCagaUUUUCUGCCcacauucuugGGAggcUUCUCa -3'
miRNA:   3'- aCCCUGGg--AAAAGGCGG----------CCUa--GAGAG- -5'
28555 5' -56 NC_005946.1 + 25872 0.67 0.781131
Target:  5'- gGGGACCUga---UGCUGGaAUUUCUCg -3'
miRNA:   3'- aCCCUGGGaaaagGCGGCC-UAGAGAG- -5'
28555 5' -56 NC_005946.1 + 39955 0.67 0.761878
Target:  5'- uUGGGGCUCUgcgaugucCCGuuGGggUUCUCu -3'
miRNA:   3'- -ACCCUGGGAaaa-----GGCggCCuaGAGAG- -5'
28555 5' -56 NC_005946.1 + 42295 0.7 0.603278
Target:  5'- cUGGGGCCCUUUggacccucaggacCCGCgGGAccagUCUCa- -3'
miRNA:   3'- -ACCCUGGGAAAa------------GGCGgCCU----AGAGag -5'
28555 5' -56 NC_005946.1 + 23164 0.71 0.56579
Target:  5'- aGGGACCCUgg-CCGCucCGGAcgC-CUCa -3'
miRNA:   3'- aCCCUGGGAaaaGGCG--GCCUa-GaGAG- -5'
28555 5' -56 NC_005946.1 + 42363 0.72 0.494963
Target:  5'- cGGGACCCUUUgggCCGUCGGGc----- -3'
miRNA:   3'- aCCCUGGGAAAa--GGCGGCCUagagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.