miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28556 5' -56.8 NC_005946.1 + 14134 0.66 0.753536
Target:  5'- uGGaCGAgGUGCACCAccucagGUCAGugcAGGCCGAa -3'
miRNA:   3'- -UC-GCU-CAUGUGGUa-----CGGUC---UCCGGUU- -5'
28556 5' -56.8 NC_005946.1 + 104039 0.67 0.712676
Target:  5'- uGGCuccagACugUAUGUCGGAGGCCAc -3'
miRNA:   3'- -UCGcuca-UGugGUACGGUCUCCGGUu -5'
28556 5' -56.8 NC_005946.1 + 7329 0.67 0.712676
Target:  5'- uGCGAGUGCACCGcgacUGCCGuGGuguauGCCGu -3'
miRNA:   3'- uCGCUCAUGUGGU----ACGGUcUC-----CGGUu -5'
28556 5' -56.8 NC_005946.1 + 98452 0.67 0.702249
Target:  5'- cAGCGAGUaguacucgACucCCAUGUCGGGGaGCCu- -3'
miRNA:   3'- -UCGCUCA--------UGu-GGUACGGUCUC-CGGuu -5'
28556 5' -56.8 NC_005946.1 + 2915 0.67 0.702249
Target:  5'- cAGCGAGgauCGCCucgGauaUAGAGGCCGc -3'
miRNA:   3'- -UCGCUCau-GUGGua-Cg--GUCUCCGGUu -5'
28556 5' -56.8 NC_005946.1 + 14448 0.68 0.628021
Target:  5'- aGGCaaGAcGUGCACCGUgGUCAGuguGGCCGAg -3'
miRNA:   3'- -UCG--CU-CAUGUGGUA-CGGUCu--CCGGUU- -5'
28556 5' -56.8 NC_005946.1 + 23612 0.68 0.626954
Target:  5'- cGGCGgugaggGGUACGaaaggagUCAUGCCAGuGGCCGc -3'
miRNA:   3'- -UCGC------UCAUGU-------GGUACGGUCuCCGGUu -5'
28556 5' -56.8 NC_005946.1 + 48122 0.69 0.596071
Target:  5'- aGGUGGGUAgAaagAUGUCGGGGGCCAGg -3'
miRNA:   3'- -UCGCUCAUgUgg-UACGGUCUCCGGUU- -5'
28556 5' -56.8 NC_005946.1 + 14961 0.69 0.596071
Target:  5'- gGGCGGGguagacggGCACUGUGCCGGcGGCa-- -3'
miRNA:   3'- -UCGCUCa-------UGUGGUACGGUCuCCGguu -5'
28556 5' -56.8 NC_005946.1 + 105565 0.7 0.533148
Target:  5'- -cCGAGUACAUUGUGCCGuccAGGCCAc -3'
miRNA:   3'- ucGCUCAUGUGGUACGGUc--UCCGGUu -5'
28556 5' -56.8 NC_005946.1 + 26652 0.7 0.492527
Target:  5'- uGGCcccGUACACCA-GCCAGGGGaCCGu -3'
miRNA:   3'- -UCGcu-CAUGUGGUaCGGUCUCC-GGUu -5'
28556 5' -56.8 NC_005946.1 + 86996 0.7 0.482592
Target:  5'- aGGaCGGGUucgGCGCCcgGCCuGGGGUCAAa -3'
miRNA:   3'- -UC-GCUCA---UGUGGuaCGGuCUCCGGUU- -5'
28556 5' -56.8 NC_005946.1 + 14196 0.73 0.347208
Target:  5'- gAGCGuGgcCACCAUGagcgCGGAGGCCAu -3'
miRNA:   3'- -UCGCuCauGUGGUACg---GUCUCCGGUu -5'
28556 5' -56.8 NC_005946.1 + 78991 0.85 0.060965
Target:  5'- aGGCGGcGUACGCCAggGCCGGGGGCCAc -3'
miRNA:   3'- -UCGCU-CAUGUGGUa-CGGUCUCCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.