miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28557 3' -61.6 NC_005946.1 + 64839 0.69 0.427269
Target:  5'- cGGCCCgagauccccgcgagCGcCAGUUG-CUCCCUugucgCCCCu -3'
miRNA:   3'- aCCGGGa-------------GC-GUCAGCaGAGGGA-----GGGG- -5'
28557 3' -61.6 NC_005946.1 + 34627 0.69 0.415163
Target:  5'- gGGCCCUCaGCcucuGGUUGUCcUCCguggacgUCCCCg -3'
miRNA:   3'- aCCGGGAG-CG----UCAGCAG-AGGg------AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 4422 0.69 0.389943
Target:  5'- gGGUCCUCGCcauAGUCcacaggCCCUCCuCCg -3'
miRNA:   3'- aCCGGGAGCG---UCAGcaga--GGGAGG-GG- -5'
28557 3' -61.6 NC_005946.1 + 42344 0.69 0.381763
Target:  5'- gGGCCC-CGC-GUCGUCcgCUaucagaUCCCCg -3'
miRNA:   3'- aCCGGGaGCGuCAGCAGa-GGg-----AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 28195 0.7 0.350202
Target:  5'- cGG-UCUUGCcGUUGUUUCCCgUCCCCg -3'
miRNA:   3'- aCCgGGAGCGuCAGCAGAGGG-AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 10366 0.71 0.327777
Target:  5'- gUGGUCCUCGCAcGggUGUucCUCCgCUCCCUu -3'
miRNA:   3'- -ACCGGGAGCGU-Ca-GCA--GAGG-GAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 22914 0.71 0.313427
Target:  5'- aGG-CCUCGCAcguGUCGUCgucugugCCUUCUCCg -3'
miRNA:   3'- aCCgGGAGCGU---CAGCAGa------GGGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 24313 0.71 0.292804
Target:  5'- aGGUCCUcaCGCAGUcugccaCGUCUCCCcugcUCuCCCa -3'
miRNA:   3'- aCCGGGA--GCGUCA------GCAGAGGG----AG-GGG- -5'
28557 3' -61.6 NC_005946.1 + 9298 0.72 0.286169
Target:  5'- aGGuCCCUaGguGUCG-CUCCCUUCUCg -3'
miRNA:   3'- aCC-GGGAgCguCAGCaGAGGGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 35341 0.72 0.254768
Target:  5'- aGGaCCUCgGCAG-CGUCUCCCaggUCCCa -3'
miRNA:   3'- aCCgGGAG-CGUCaGCAGAGGGa--GGGG- -5'
28557 3' -61.6 NC_005946.1 + 82672 0.75 0.159718
Target:  5'- gGGCCCUaCGCGGgugcaauggCUCCCUCCCa -3'
miRNA:   3'- aCCGGGA-GCGUCagca-----GAGGGAGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.