miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28557 5' -51.5 NC_005946.1 + 67727 0.66 0.957243
Target:  5'- cCAGGGccaccACGGugaccUCGGGCUGAGGGaCg -3'
miRNA:   3'- aGUCCUau---UGUC-----AGUUCGACUCCCgG- -5'
28557 5' -51.5 NC_005946.1 + 71912 0.7 0.834339
Target:  5'- aCGGGGUGAUAgacccGUCGuGCgcGGGGGCCc -3'
miRNA:   3'- aGUCCUAUUGU-----CAGUuCGa-CUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 72814 0.71 0.78793
Target:  5'- cCAGGGagguugugcUGGCcaccGUCAGGCUGggaaAGGGCCu -3'
miRNA:   3'- aGUCCU---------AUUGu---CAGUUCGAC----UCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 73081 0.67 0.938732
Target:  5'- aCAGGcaacugGACAGUCAagaggcucGGCcccccuucuuaugUGAGGGUCg -3'
miRNA:   3'- aGUCCua----UUGUCAGU--------UCG-------------ACUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 76428 0.67 0.948763
Target:  5'- aCAGGGguccaGACGGUUuGGCcggaaUGAgGGGCCu -3'
miRNA:   3'- aGUCCUa----UUGUCAGuUCG-----ACU-CCCGG- -5'
28557 5' -51.5 NC_005946.1 + 76643 0.67 0.953132
Target:  5'- cCAGGGgccCAGggGAGCaGAGGGaCCa -3'
miRNA:   3'- aGUCCUauuGUCagUUCGaCUCCC-GG- -5'
28557 5' -51.5 NC_005946.1 + 85256 0.69 0.890411
Target:  5'- cUUGGGGcuuGgAGg-GAGCUGGGGGCCa -3'
miRNA:   3'- -AGUCCUau-UgUCagUUCGACUCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 94041 0.67 0.939236
Target:  5'- aUCAGGAccAGCAGggggaggAGGCUGgugauugccAGGGCCc -3'
miRNA:   3'- -AGUCCUa-UUGUCag-----UUCGAC---------UCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 95378 0.73 0.684632
Target:  5'- gUCAGGggGACcGUCAGGCccaGGGGCUu -3'
miRNA:   3'- -AGUCCuaUUGuCAGUUCGac-UCCCGG- -5'
28557 5' -51.5 NC_005946.1 + 98542 0.75 0.576301
Target:  5'- --uGGGUGGgGGUCcugcAGGCUGAGGGCa -3'
miRNA:   3'- aguCCUAUUgUCAG----UUCGACUCCCGg -5'
28557 5' -51.5 NC_005946.1 + 102092 0.72 0.734459
Target:  5'- gUCAGGAccuGCAccgucucgggguccGUCAGGCUGGGGuCCa -3'
miRNA:   3'- -AGUCCUau-UGU--------------CAGUUCGACUCCcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.