miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28565 5' -60.3 NC_005946.1 + 14621 0.66 0.705454
Target:  5'- aCCCUGC-UGGACGCuuuCCCCGGaGAGa -3'
miRNA:   3'- gGGGAUGcGUCUGCG---GGGGCUgCUCc -5'
28565 5' -60.3 NC_005946.1 + 67435 0.66 0.705454
Target:  5'- aCCCCUggugGCGUagaGGugGUCCCUGACc--- -3'
miRNA:   3'- -GGGGA----UGCG---UCugCGGGGGCUGcucc -5'
28565 5' -60.3 NC_005946.1 + 44326 0.66 0.684846
Target:  5'- aCCCUUGCGCuugagggcuggguGGAgGCCCCUGuuuGCGGu- -3'
miRNA:   3'- -GGGGAUGCG-------------UCUgCGGGGGC---UGCUcc -5'
28565 5' -60.3 NC_005946.1 + 89871 0.66 0.666041
Target:  5'- aCCUCUGCcCGGugG-CCUCGcCGGGGa -3'
miRNA:   3'- -GGGGAUGcGUCugCgGGGGCuGCUCC- -5'
28565 5' -60.3 NC_005946.1 + 86713 0.66 0.666041
Target:  5'- cUCCCUGaGCGGAgGCCaCCagGAUGAGa -3'
miRNA:   3'- -GGGGAUgCGUCUgCGG-GGg-CUGCUCc -5'
28565 5' -60.3 NC_005946.1 + 73709 0.66 0.666041
Target:  5'- gCCCUACaucaaGCAGuACGUgCCCGugGGa- -3'
miRNA:   3'- gGGGAUG-----CGUC-UGCGgGGGCugCUcc -5'
28565 5' -60.3 NC_005946.1 + 73450 0.66 0.656102
Target:  5'- gCCaaaUACGCAGAUcggGCCUCUGugGAagaGGa -3'
miRNA:   3'- gGGg--AUGCGUCUG---CGGGGGCugCU---CC- -5'
28565 5' -60.3 NC_005946.1 + 27778 0.67 0.646145
Target:  5'- cUCCCUAaaguCGUAGAUGCCgUUGGCGAa- -3'
miRNA:   3'- -GGGGAU----GCGUCUGCGGgGGCUGCUcc -5'
28565 5' -60.3 NC_005946.1 + 41578 0.67 0.646145
Target:  5'- aCCCCUcCGCcgccAGACGUCCCCGcCu--- -3'
miRNA:   3'- -GGGGAuGCG----UCUGCGGGGGCuGcucc -5'
28565 5' -60.3 NC_005946.1 + 72895 0.67 0.636177
Target:  5'- gUCCCUACG-AGACGCCCgaGG-GAGa -3'
miRNA:   3'- -GGGGAUGCgUCUGCGGGggCUgCUCc -5'
28565 5' -60.3 NC_005946.1 + 102227 0.68 0.586438
Target:  5'- aCCCUcACGCAGcacagcuCGgCCUCGuCGGGGg -3'
miRNA:   3'- gGGGA-UGCGUCu------GCgGGGGCuGCUCC- -5'
28565 5' -60.3 NC_005946.1 + 96573 0.68 0.586438
Target:  5'- aCUCUGgugcCGcCAGACGCCa-UGACGAGGg -3'
miRNA:   3'- gGGGAU----GC-GUCUGCGGggGCUGCUCC- -5'
28565 5' -60.3 NC_005946.1 + 86072 0.68 0.576558
Target:  5'- -gCUUGCGguG-CGCuCCCCuGCGAGGu -3'
miRNA:   3'- ggGGAUGCguCuGCG-GGGGcUGCUCC- -5'
28565 5' -60.3 NC_005946.1 + 71900 0.68 0.547167
Target:  5'- aCCCgucgUGCGCGGGgGCCCuuGccAgGAGGg -3'
miRNA:   3'- gGGG----AUGCGUCUgCGGGggC--UgCUCC- -5'
28565 5' -60.3 NC_005946.1 + 95333 0.68 0.537472
Target:  5'- cCCCCgagGCGauuucccccGGCGCCCgUgGACGAGGc -3'
miRNA:   3'- -GGGGa--UGCgu-------CUGCGGG-GgCUGCUCC- -5'
28565 5' -60.3 NC_005946.1 + 25892 0.68 0.537472
Target:  5'- aCUCUAgGCc--CGUCCUCGACGGGGa -3'
miRNA:   3'- gGGGAUgCGucuGCGGGGGCUGCUCC- -5'
28565 5' -60.3 NC_005946.1 + 73527 0.7 0.44456
Target:  5'- aCCCCgugGCGGAucuggccaagcaCGUCCCCGACGgcAGGu -3'
miRNA:   3'- -GGGGaugCGUCU------------GCGGGGGCUGC--UCC- -5'
28565 5' -60.3 NC_005946.1 + 74998 0.7 0.435758
Target:  5'- gCUCCaGCGC---UGCCCCUGAUGAGGc -3'
miRNA:   3'- -GGGGaUGCGucuGCGGGGGCUGCUCC- -5'
28565 5' -60.3 NC_005946.1 + 80367 0.72 0.34606
Target:  5'- gUCCCUGCcuucggaCAGGgGCCCuCCGACGuGGa -3'
miRNA:   3'- -GGGGAUGc------GUCUgCGGG-GGCUGCuCC- -5'
28565 5' -60.3 NC_005946.1 + 79943 0.74 0.25815
Target:  5'- gCCCaucuggACGCcgAGGCGCCCaCGGCGGGGg -3'
miRNA:   3'- -GGGga----UGCG--UCUGCGGGgGCUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.