miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28566 3' -52.8 NC_005946.1 + 97230 0.66 0.956123
Target:  5'- --gGGCUG-GGGCUCUGGgGUCUUGGg -3'
miRNA:   3'- guaCUGGUaUCUGAGACUgCGGGACC- -5'
28566 3' -52.8 NC_005946.1 + 47623 0.66 0.938177
Target:  5'- --aGGCuCAgGGACUCUGcCaCCCUGGc -3'
miRNA:   3'- guaCUG-GUaUCUGAGACuGcGGGACC- -5'
28566 3' -52.8 NC_005946.1 + 97885 0.67 0.927662
Target:  5'- -uUGGCCGggaGGACcCUGGCuccGUCCUGGc -3'
miRNA:   3'- guACUGGUa--UCUGaGACUG---CGGGACC- -5'
28566 3' -52.8 NC_005946.1 + 13116 0.67 0.927662
Target:  5'- --aGGuCCAUAGACUCUGAcauguaCGCCUg-- -3'
miRNA:   3'- guaCU-GGUAUCUGAGACU------GCGGGacc -5'
28566 3' -52.8 NC_005946.1 + 98205 0.67 0.922014
Target:  5'- -uUGACCAUguGGACUggGGCGgCCUGc -3'
miRNA:   3'- guACUGGUA--UCUGAgaCUGCgGGACc -5'
28566 3' -52.8 NC_005946.1 + 27431 0.67 0.916106
Target:  5'- --cGGCCGagaugAGGCUcCUGAggucggUGCCCUGGu -3'
miRNA:   3'- guaCUGGUa----UCUGA-GACU------GCGGGACC- -5'
28566 3' -52.8 NC_005946.1 + 69308 0.67 0.916106
Target:  5'- uGUGucACCGUAGACgagCUGAcCGCCgUGc -3'
miRNA:   3'- gUAC--UGGUAUCUGa--GACU-GCGGgACc -5'
28566 3' -52.8 NC_005946.1 + 67509 0.67 0.903514
Target:  5'- -uUGACCA-GGACgUCUGAgGCCUUucGGg -3'
miRNA:   3'- guACUGGUaUCUG-AGACUgCGGGA--CC- -5'
28566 3' -52.8 NC_005946.1 + 12399 0.69 0.859762
Target:  5'- --gGACCGUGuGGCUCc-ACGCCCgGGg -3'
miRNA:   3'- guaCUGGUAU-CUGAGacUGCGGGaCC- -5'
28566 3' -52.8 NC_005946.1 + 25529 0.69 0.859762
Target:  5'- uCAUGACCA-AGcuuaACUUUGACGCCUcaGGa -3'
miRNA:   3'- -GUACUGGUaUC----UGAGACUGCGGGa-CC- -5'
28566 3' -52.8 NC_005946.1 + 17089 0.69 0.834785
Target:  5'- gAUGACU--GGGCUacgaUGAgaaCGCCCUGGa -3'
miRNA:   3'- gUACUGGuaUCUGAg---ACU---GCGGGACC- -5'
28566 3' -52.8 NC_005946.1 + 20900 0.7 0.798716
Target:  5'- --aGGCCcugucGGcCUCaGACGCCCUGGa -3'
miRNA:   3'- guaCUGGua---UCuGAGaCUGCGGGACC- -5'
28566 3' -52.8 NC_005946.1 + 53435 0.7 0.779659
Target:  5'- --gGACCGUGGAC-CgugGACGCCaaagGGg -3'
miRNA:   3'- guaCUGGUAUCUGaGa--CUGCGGga--CC- -5'
28566 3' -52.8 NC_005946.1 + 56083 0.71 0.7399
Target:  5'- cCAUGGCCcucAGGCUCUccagggugaggGugGCCCUGu -3'
miRNA:   3'- -GUACUGGua-UCUGAGA-----------CugCGGGACc -5'
28566 3' -52.8 NC_005946.1 + 88610 0.74 0.605954
Target:  5'- gCAUGGCCGUGGACgaugaguacuccauaGACGgCCUGGg -3'
miRNA:   3'- -GUACUGGUAUCUGaga------------CUGCgGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.