miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28566 5' -59.3 NC_005946.1 + 8250 0.66 0.662644
Target:  5'- aUCCUGCAUGGCGccgucUGGccacugccugGCGUugGGUCUGc -3'
miRNA:   3'- cGGGACGUGCCGC-----ACC----------UGCA--CCAGAU- -5'
28566 5' -59.3 NC_005946.1 + 72728 0.66 0.642099
Target:  5'- gGCgCUGCGgGGUccgcguccGUGGACGUGGa--- -3'
miRNA:   3'- -CGgGACGUgCCG--------CACCUGCACCagau -5'
28566 5' -59.3 NC_005946.1 + 72693 0.69 0.481481
Target:  5'- gGUCCUGUGCGGCGUG-ACG-GGUg-- -3'
miRNA:   3'- -CGGGACGUGCCGCACcUGCaCCAgau -5'
28566 5' -59.3 NC_005946.1 + 2096 0.7 0.44415
Target:  5'- uGCCCUGCGCGGCu--GACGUcGGagagCUAa -3'
miRNA:   3'- -CGGGACGUGCCGcacCUGCA-CCa---GAU- -5'
28566 5' -59.3 NC_005946.1 + 66936 0.7 0.417246
Target:  5'- -aCCUGCAUGGCcUGGuucaagauCGUGGUCa- -3'
miRNA:   3'- cgGGACGUGCCGcACCu-------GCACCAGau -5'
28566 5' -59.3 NC_005946.1 + 56464 0.72 0.342831
Target:  5'- cGUCCUGCGgGGCGUGGACcucugGaGUCg- -3'
miRNA:   3'- -CGGGACGUgCCGCACCUGca---C-CAGau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.