miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28568 5' -54.6 NC_005946.1 + 21387 0.66 0.902111
Target:  5'- cGCAGUCAGGGUaaagAGGGAGGUGg--- -3'
miRNA:   3'- cCGUCAGUCCUGg---UCCCUCUAUgaga -5'
28568 5' -54.6 NC_005946.1 + 36260 0.66 0.895432
Target:  5'- cGGCGGUggCGGGuCUGGGGGGAgcgGC-CUu -3'
miRNA:   3'- -CCGUCA--GUCCuGGUCCCUCUa--UGaGA- -5'
28568 5' -54.6 NC_005946.1 + 88679 0.66 0.895432
Target:  5'- uGCccGUCAaccccucGACCAGGGAGAgccUACUCg -3'
miRNA:   3'- cCGu-CAGUc------CUGGUCCCUCU---AUGAGa -5'
28568 5' -54.6 NC_005946.1 + 94597 0.66 0.894751
Target:  5'- gGGCAagaGgauccCAGaGACCAGGGAGAUguacgacGCUUa -3'
miRNA:   3'- -CCGU---Ca----GUC-CUGGUCCCUCUA-------UGAGa -5'
28568 5' -54.6 NC_005946.1 + 21514 0.67 0.845397
Target:  5'- aGGCGGUucucaagagccugucCAGGucaGCCAGGGAccuggACUCUg -3'
miRNA:   3'- -CCGUCA---------------GUCC---UGGUCCCUcua--UGAGA- -5'
28568 5' -54.6 NC_005946.1 + 76577 0.67 0.824858
Target:  5'- cGGUccGGUCGGGcCCGuGGGAGcgGCUg- -3'
miRNA:   3'- -CCG--UCAGUCCuGGU-CCCUCuaUGAga -5'
28568 5' -54.6 NC_005946.1 + 21238 0.69 0.769055
Target:  5'- cGGCAGacucUCAcGGCguCAGGGAGAUGCUg- -3'
miRNA:   3'- -CCGUC----AGUcCUG--GUCCCUCUAUGAga -5'
28568 5' -54.6 NC_005946.1 + 13851 0.69 0.759239
Target:  5'- aGGCccgacgCGGGucuuacauuuGCCGGGGAGGUGCUUg -3'
miRNA:   3'- -CCGuca---GUCC----------UGGUCCCUCUAUGAGa -5'
28568 5' -54.6 NC_005946.1 + 103108 0.69 0.739255
Target:  5'- cGGCAGgaccgcCGGGACCcaGGGGAGAgaagGgUCc -3'
miRNA:   3'- -CCGUCa-----GUCCUGG--UCCCUCUa---UgAGa -5'
28568 5' -54.6 NC_005946.1 + 17239 0.7 0.698167
Target:  5'- aGGUuGUCAGaGGCCAGGGGGcuGUAC-Ca -3'
miRNA:   3'- -CCGuCAGUC-CUGGUCCCUC--UAUGaGa -5'
28568 5' -54.6 NC_005946.1 + 49771 0.7 0.698167
Target:  5'- aGGUcuuguaaaAGUUGGGcACCAGGGAGGccgaggcgUACUCUu -3'
miRNA:   3'- -CCG--------UCAGUCC-UGGUCCCUCU--------AUGAGA- -5'
28568 5' -54.6 NC_005946.1 + 31546 0.72 0.575799
Target:  5'- cGGCAGUCAGGaACCacauagaccuguugaGGGGAGcUACg-- -3'
miRNA:   3'- -CCGUCAGUCC-UGG---------------UCCCUCuAUGaga -5'
28568 5' -54.6 NC_005946.1 + 71162 0.74 0.470333
Target:  5'- uGGCGGgCAGGuCCAGGGAGGgggGCa-- -3'
miRNA:   3'- -CCGUCaGUCCuGGUCCCUCUa--UGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.