Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28569 | 5' | -42.6 | NC_005946.1 | + | 46528 | 0.66 | 1 |
|
Target: 5'- -aGUCUGUAAAUGUcgUUGcAUCUCa -3' miRNA: 3'- ggCAGACAUUUAUAuaGAUuUGGGGa -5' |
|||||||
| 28569 | 5' | -42.6 | NC_005946.1 | + | 56388 | 0.69 | 0.999965 |
|
Target: 5'- gCCGUCUGUGAcgGccgaGUCcagGAGCCCg- -3' miRNA: 3'- -GGCAGACAUUuaUa---UAGa--UUUGGGga -5' |
|||||||
| 28569 | 5' | -42.6 | NC_005946.1 | + | 26783 | 0.71 | 0.999665 |
|
Target: 5'- cCUGUCUG-AGGUAgGUCU--ACCCCa -3' miRNA: 3'- -GGCAGACaUUUAUaUAGAuuUGGGGa -5' |
|||||||
| 28569 | 5' | -42.6 | NC_005946.1 | + | 42209 | 0.72 | 0.999144 |
|
Target: 5'- gCCGUCcacuAcgAUGUCUGGACCCUg -3' miRNA: 3'- -GGCAGacauUuaUAUAGAUUUGGGGa -5' |
|||||||
| 28569 | 5' | -42.6 | NC_005946.1 | + | 81285 | 0.73 | 0.997881 |
|
Target: 5'- uCUGUCUGUAAAguuucagcacaGUCUcAGCCCCa -3' miRNA: 3'- -GGCAGACAUUUaua--------UAGAuUUGGGGa -5' |
|||||||
| 28569 | 5' | -42.6 | NC_005946.1 | + | 80604 | 0.78 | 0.952222 |
|
Target: 5'- aCCGUCUGagAGAUuaaGUCUGAGCCUCa -3' miRNA: 3'- -GGCAGACa-UUUAua-UAGAUUUGGGGa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home