miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28571 3' -45 NC_005946.1 + 103764 0.66 0.999945
Target:  5'- cGGggcuGACGUAcccauuggaggGGUAGCugCCCUGUc -3'
miRNA:   3'- -UCacauUUGUAU-----------UCAUUGugGGGACA- -5'
28571 3' -45 NC_005946.1 + 34470 0.66 0.999925
Target:  5'- cGUGUAGGCGUGAGcaauGCACUCgUa- -3'
miRNA:   3'- uCACAUUUGUAUUCau--UGUGGGgAca -5'
28571 3' -45 NC_005946.1 + 57103 0.66 0.999925
Target:  5'- -uUGUGGACAaacucaGAGUAACACaCCCUc- -3'
miRNA:   3'- ucACAUUUGUa-----UUCAUUGUG-GGGAca -5'
28571 3' -45 NC_005946.1 + 15719 0.66 0.9999
Target:  5'- cGGUGgagAAACGUAAcuGUugUugCCCUGUc -3'
miRNA:   3'- -UCACa--UUUGUAUU--CAuuGugGGGACA- -5'
28571 3' -45 NC_005946.1 + 44367 0.67 0.999624
Target:  5'- aGGUGUAucucguuGCAgAGGUuGCuGCCCCUGa -3'
miRNA:   3'- -UCACAUu------UGUaUUCAuUG-UGGGGACa -5'
28571 3' -45 NC_005946.1 + 52534 0.68 0.99924
Target:  5'- uGUG-AAGCGUAAGU----CCCCUGUg -3'
miRNA:   3'- uCACaUUUGUAUUCAuuguGGGGACA- -5'
28571 3' -45 NC_005946.1 + 52570 0.68 0.99924
Target:  5'- uGUG-AAGCGUAAGU----CCCCUGUg -3'
miRNA:   3'- uCACaUUUGUAUUCAuuguGGGGACA- -5'
28571 3' -45 NC_005946.1 + 52606 0.68 0.99924
Target:  5'- uGUG-AAGCGUAAGU----CCCCUGUg -3'
miRNA:   3'- uCACaUUUGUAUUCAuuguGGGGACA- -5'
28571 3' -45 NC_005946.1 + 52642 0.68 0.99924
Target:  5'- uGUG-AAGCGUAAGU----CCCCUGUg -3'
miRNA:   3'- uCACaUUUGUAUUCAuuguGGGGACA- -5'
28571 3' -45 NC_005946.1 + 52715 0.68 0.99924
Target:  5'- uGUG-AAGCGUAAGU----CCCCUGUg -3'
miRNA:   3'- uCACaUUUGUAUUCAuuguGGGGACA- -5'
28571 3' -45 NC_005946.1 + 52751 0.68 0.99924
Target:  5'- uGUG-AAGCGUAAGU----CCCCUGUg -3'
miRNA:   3'- uCACaUUUGUAUUCAuuguGGGGACA- -5'
28571 3' -45 NC_005946.1 + 52787 0.68 0.99924
Target:  5'- uGUG-AAGCGUAAGU----CCCCUGUg -3'
miRNA:   3'- uCACaUUUGUAUUCAuuguGGGGACA- -5'
28571 3' -45 NC_005946.1 + 31322 0.68 0.999053
Target:  5'- ----cAGACGUcGGUGACAaacCCCCUGUg -3'
miRNA:   3'- ucacaUUUGUAuUCAUUGU---GGGGACA- -5'
28571 3' -45 NC_005946.1 + 52679 0.69 0.998559
Target:  5'- uGUG-AAGCGUAAGU--C-CCCCUGUg -3'
miRNA:   3'- uCACaUUUGUAUUCAuuGuGGGGACA- -5'
28571 3' -45 NC_005946.1 + 105158 0.83 0.602107
Target:  5'- cAGUGUAAACAUAAGUcAUAUgCCUGUg -3'
miRNA:   3'- -UCACAUUUGUAUUCAuUGUGgGGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.