miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28583 5' -48.8 NC_005965.1 + 4138 0.94 0.002308
Target:  5'- gUACACC-AAGUAAACAUCGUCACCCAc -3'
miRNA:   3'- -AUGUGGcUUCAUUUGUAGCAGUGGGU- -5'
28583 5' -48.8 NC_005965.1 + 5014 0.67 0.318411
Target:  5'- cUGCAUCGGAGUAcGACAUCGgagucgcaaUCAUgCAg -3'
miRNA:   3'- -AUGUGGCUUCAU-UUGUAGC---------AGUGgGU- -5'
28583 5' -48.8 NC_005965.1 + 4139 0.71 0.148252
Target:  5'- gUAUGCUGAAGcAGGCgaaGUCGUUACCCGg -3'
miRNA:   3'- -AUGUGGCUUCaUUUG---UAGCAGUGGGU- -5'
28583 5' -48.8 NC_005965.1 + 4641 0.68 0.271827
Target:  5'- -cCGCuCGAAGUGAACGU-GUUgACCCAa -3'
miRNA:   3'- auGUG-GCUUCAUUUGUAgCAG-UGGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.