miRNA display CGI


Results 41 - 60 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2870 3' -49 NC_001493.1 + 129789 0.67 0.993804
Target:  5'- uGAcgCCGaacgCGAGAcacAGGCAACCCUUGa -3'
miRNA:   3'- -UUuaGGUg---GUUUU---UCCGUUGGGAGCg -5'
2870 3' -49 NC_001493.1 + 130473 0.66 0.997267
Target:  5'- cGGUCCGCCccauGGGGGCAggggggaagGgCUUCGCc -3'
miRNA:   3'- uUUAGGUGGuu--UUUCCGU---------UgGGAGCG- -5'
2870 3' -49 NC_001493.1 + 66342 0.69 0.976985
Target:  5'- gGGGUCgACCAGgucauAGAGGuCGuucugcccACCCUCGCc -3'
miRNA:   3'- -UUUAGgUGGUU-----UUUCC-GU--------UGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 24953 0.74 0.841515
Target:  5'- aAAAUaCCACCAu--GGGCGACUgucugCUCGCg -3'
miRNA:   3'- -UUUA-GGUGGUuuuUCCGUUGG-----GAGCG- -5'
2870 3' -49 NC_001493.1 + 49624 0.66 0.996636
Target:  5'- uGAUCCGCagccucgcAGGUc-CCCUCGCa -3'
miRNA:   3'- uUUAGGUGguuuu---UCCGuuGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 108924 0.7 0.964811
Target:  5'- uGAAUCCGCCGucGA--CAGCCgUCGCg -3'
miRNA:   3'- -UUUAGGUGGUuuUUccGUUGGgAGCG- -5'
2870 3' -49 NC_001493.1 + 101955 0.69 0.971361
Target:  5'- ---gCCGCCc--AAGGCGGCCCcaUCGUu -3'
miRNA:   3'- uuuaGGUGGuuuUUCCGUUGGG--AGCG- -5'
2870 3' -49 NC_001493.1 + 57488 0.69 0.976985
Target:  5'- cGAUUCAUCGAAcgcGGCcagcccGCCCUCGCc -3'
miRNA:   3'- uUUAGGUGGUUUuu-CCGu-----UGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 61864 0.68 0.979232
Target:  5'- -uAUCCACgGGGAAGGCGauggcgaGCCCggUCGg -3'
miRNA:   3'- uuUAGGUGgUUUUUCCGU-------UGGG--AGCg -5'
2870 3' -49 NC_001493.1 + 3181 0.66 0.995245
Target:  5'- --cUCCACCGGAGGGuGUAcaucgucgaucaccACCCcggCGCu -3'
miRNA:   3'- uuuAGGUGGUUUUUC-CGU--------------UGGGa--GCG- -5'
2870 3' -49 NC_001493.1 + 19902 0.66 0.994689
Target:  5'- gGAGUCgCGCCGgcccgaagGAGAGGUGAUuccgCCUCGUg -3'
miRNA:   3'- -UUUAG-GUGGU--------UUUUCCGUUG----GGAGCG- -5'
2870 3' -49 NC_001493.1 + 118736 0.66 0.994606
Target:  5'- --cUCCACCGGAGGGuGUAcaucgucgauaccACCCcggCGCu -3'
miRNA:   3'- uuuAGGUGGUUUUUC-CGU-------------UGGGa--GCG- -5'
2870 3' -49 NC_001493.1 + 28051 0.67 0.993804
Target:  5'- uGGAUCgACCGGAccGGGCGGCCgUCu- -3'
miRNA:   3'- -UUUAGgUGGUUUu-UCCGUUGGgAGcg -5'
2870 3' -49 NC_001493.1 + 112086 0.67 0.992805
Target:  5'- cGAUCCACgGGu--GGUauuauugcuaucGACCCUCGUc -3'
miRNA:   3'- uUUAGGUGgUUuuuCCG------------UUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 58848 0.67 0.991681
Target:  5'- -cGUCCACCGAuuuguucucguaGAGGGCcgugAGCCggUCGCg -3'
miRNA:   3'- uuUAGGUGGUU------------UUUCCG----UUGGg-AGCG- -5'
2870 3' -49 NC_001493.1 + 80200 0.67 0.992805
Target:  5'- gGAAUCaCACCGAuccGGGGCggUCUgcUCGUg -3'
miRNA:   3'- -UUUAG-GUGGUUu--UUCCGuuGGG--AGCG- -5'
2870 3' -49 NC_001493.1 + 90299 0.67 0.990422
Target:  5'- --uUCUcagGCCccuGAGGUAACCCUUGUc -3'
miRNA:   3'- uuuAGG---UGGuuuUUCCGUUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 88282 0.67 0.989019
Target:  5'- uGAGUCgCGCCuc-GAGGCgAACCUucucaUCGCg -3'
miRNA:   3'- -UUUAG-GUGGuuuUUCCG-UUGGG-----AGCG- -5'
2870 3' -49 NC_001493.1 + 126442 0.68 0.982609
Target:  5'- -uGUCgCAcCCGGGGAGGCccgugucggguauccGAUCCUCGCc -3'
miRNA:   3'- uuUAG-GU-GGUUUUUCCG---------------UUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 10888 0.68 0.982609
Target:  5'- -uGUCgCAcCCGGGGAGGCccgugucggguauccGAUCCUCGCc -3'
miRNA:   3'- uuUAG-GU-GGUUUUUCCG---------------UUGGGAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.