miRNA display CGI


Results 61 - 80 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2870 3' -49 NC_001493.1 + 108286 0.68 0.987296
Target:  5'- -uAUCCACgCGAAgGGGGCAugacagaccgaucGCgCUCGCg -3'
miRNA:   3'- uuUAGGUG-GUUU-UUCCGU-------------UGgGAGCG- -5'
2870 3' -49 NC_001493.1 + 96328 0.68 0.987461
Target:  5'- ----gCACCAGAcuGGCAACCCaCGa -3'
miRNA:   3'- uuuagGUGGUUUuuCCGUUGGGaGCg -5'
2870 3' -49 NC_001493.1 + 124630 0.66 0.997267
Target:  5'- --cUCC-CCGAuGAGcGCGACCCgggucuuuugCGCg -3'
miRNA:   3'- uuuAGGuGGUUuUUC-CGUUGGGa---------GCG- -5'
2870 3' -49 NC_001493.1 + 89923 0.66 0.997267
Target:  5'- ---aCCACCcucuGGGGGaGCucguauuCCCUCGCg -3'
miRNA:   3'- uuuaGGUGGu---UUUUC-CGuu-----GGGAGCG- -5'
2870 3' -49 NC_001493.1 + 24224 0.66 0.997267
Target:  5'- ---gUCACCGAGugguuGGCGACCCUg-- -3'
miRNA:   3'- uuuaGGUGGUUUuu---CCGUUGGGAgcg -5'
2870 3' -49 NC_001493.1 + 9075 0.66 0.997267
Target:  5'- --cUCC-CCGAuGAGcGCGACCCgggucuuuugCGCg -3'
miRNA:   3'- uuuAGGuGGUUuUUC-CGUUGGGa---------GCG- -5'
2870 3' -49 NC_001493.1 + 54826 0.66 0.996749
Target:  5'- cGAAUCCauACCGGGucguGGCAGCgCCagGCu -3'
miRNA:   3'- -UUUAGG--UGGUUUuu--CCGUUG-GGagCG- -5'
2870 3' -49 NC_001493.1 + 41362 0.66 0.996749
Target:  5'- ---cCCACCGAGAAuGCGACCaggUCGa -3'
miRNA:   3'- uuuaGGUGGUUUUUcCGUUGGg--AGCg -5'
2870 3' -49 NC_001493.1 + 46158 0.66 0.995469
Target:  5'- ----gCGCCGuuGGGauGCAGCCCaUCGCa -3'
miRNA:   3'- uuuagGUGGUuuUUC--CGUUGGG-AGCG- -5'
2870 3' -49 NC_001493.1 + 3181 0.66 0.995245
Target:  5'- --cUCCACCGGAGGGuGUAcaucgucgaucaccACCCcggCGCu -3'
miRNA:   3'- uuuAGGUGGUUUUUC-CGU--------------UGGGa--GCG- -5'
2870 3' -49 NC_001493.1 + 49624 0.66 0.996636
Target:  5'- uGAUCCGCagccucgcAGGUc-CCCUCGCa -3'
miRNA:   3'- uUUAGGUGguuuu---UCCGuuGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 19902 0.66 0.994689
Target:  5'- gGAGUCgCGCCGgcccgaagGAGAGGUGAUuccgCCUCGUg -3'
miRNA:   3'- -UUUAG-GUGGU--------UUUUCCGUUG----GGAGCG- -5'
2870 3' -49 NC_001493.1 + 118736 0.66 0.994606
Target:  5'- --cUCCACCGGAGGGuGUAcaucgucgauaccACCCcggCGCu -3'
miRNA:   3'- uuuAGGUGGUUUUUC-CGU-------------UGGGa--GCG- -5'
2870 3' -49 NC_001493.1 + 28051 0.67 0.993804
Target:  5'- uGGAUCgACCGGAccGGGCGGCCgUCu- -3'
miRNA:   3'- -UUUAGgUGGUUUu-UCCGUUGGgAGcg -5'
2870 3' -49 NC_001493.1 + 112086 0.67 0.992805
Target:  5'- cGAUCCACgGGu--GGUauuauugcuaucGACCCUCGUc -3'
miRNA:   3'- uUUAGGUGgUUuuuCCG------------UUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 80200 0.67 0.992805
Target:  5'- gGAAUCaCACCGAuccGGGGCggUCUgcUCGUg -3'
miRNA:   3'- -UUUAG-GUGGUUu--UUCCGuuGGG--AGCG- -5'
2870 3' -49 NC_001493.1 + 58848 0.67 0.991681
Target:  5'- -cGUCCACCGAuuuguucucguaGAGGGCcgugAGCCggUCGCg -3'
miRNA:   3'- uuUAGGUGGUU------------UUUCCG----UUGGg-AGCG- -5'
2870 3' -49 NC_001493.1 + 90299 0.67 0.990422
Target:  5'- --uUCUcagGCCccuGAGGUAACCCUUGUc -3'
miRNA:   3'- uuuAGG---UGGuuuUUCCGUUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 88282 0.67 0.989019
Target:  5'- uGAGUCgCGCCuc-GAGGCgAACCUucucaUCGCg -3'
miRNA:   3'- -UUUAG-GUGGuuuUUCCG-UUGGG-----AGCG- -5'
2870 3' -49 NC_001493.1 + 108707 0.66 0.997267
Target:  5'- cGGGUCCAUCGc--AGGCGAUggUCGCa -3'
miRNA:   3'- -UUUAGGUGGUuuuUCCGUUGggAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.