Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2870 | 5' | -53.8 | NC_001493.1 | + | 130582 | 0.69 | 0.854985 |
Target: 5'- --uCGACGAgagcacccaCGGUGAUGAUGAcGGCc -3' miRNA: 3'- ccuGCUGCU---------GCCGCUACUACUaCCGa -5' |
|||||||
2870 | 5' | -53.8 | NC_001493.1 | + | 68462 | 0.7 | 0.821868 |
Target: 5'- -cACGACGGCGGCGGUcGAUGccuucacgGGUg -3' miRNA: 3'- ccUGCUGCUGCCGCUA-CUACua------CCGa -5' |
|||||||
2870 | 5' | -53.8 | NC_001493.1 | + | 45832 | 0.72 | 0.737898 |
Target: 5'- uGACGAUGuCGuaGGUGGUGGUGGUc -3' miRNA: 3'- cCUGCUGCuGCcgCUACUACUACCGa -5' |
|||||||
2870 | 5' | -53.8 | NC_001493.1 | + | 110441 | 0.76 | 0.513588 |
Target: 5'- -cGCGGCGAUGGCGAagauUGAgccccUGGUGGCa -3' miRNA: 3'- ccUGCUGCUGCCGCU----ACU-----ACUACCGa -5' |
|||||||
2870 | 5' | -53.8 | NC_001493.1 | + | 1014 | 1.09 | 0.004399 |
Target: 5'- uGGACGACGACGGCGAUGAUGAUGGCUu -3' miRNA: 3'- -CCUGCUGCUGCCGCUACUACUACCGA- -5' |
|||||||
2870 | 5' | -53.8 | NC_001493.1 | + | 116568 | 1.09 | 0.004399 |
Target: 5'- uGGACGACGACGGCGAUGAUGAUGGCUu -3' miRNA: 3'- -CCUGCUGCUGCCGCUACUACUACCGA- -5' |
|||||||
2870 | 5' | -53.8 | NC_001493.1 | + | 55705 | 0.66 | 0.955684 |
Target: 5'- aGGGCGGaGAUGGCGAaacuacgGGUGAcgGGUUu -3' miRNA: 3'- -CCUGCUgCUGCCGCUa------CUACUa-CCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home