miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2872 5' -59.9 NC_001493.1 + 3458 0.7 0.518171
Target:  5'- gACugGCGUCCCGa---GGagCGCCCCa -3'
miRNA:   3'- -UGugCGCAGGGCaagaCUggGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 14156 0.66 0.761861
Target:  5'- -gACGCGcCCCGggUgacgaccucgUGACCCugGCCCUc -3'
miRNA:   3'- ugUGCGCaGGGCaaG----------ACUGGG--CGGGG- -5'
2872 5' -59.9 NC_001493.1 + 129114 0.66 0.71451
Target:  5'- gAC-CGCGguggagaggCCCGagaCcGACCCGUCCCg -3'
miRNA:   3'- -UGuGCGCa--------GGGCaa-GaCUGGGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 27620 0.66 0.71451
Target:  5'- cCGCGCGggCUCGg---GAUCgGCCCCg -3'
miRNA:   3'- uGUGCGCa-GGGCaagaCUGGgCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 13560 0.66 0.71451
Target:  5'- gAC-CGCGguggagaggCCCGagaCcGACCCGUCCCg -3'
miRNA:   3'- -UGuGCGCa--------GGGCaa-GaCUGGGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 126539 0.67 0.704808
Target:  5'- uGCGC-CGUCUCGUUCU---UCGCCCUg -3'
miRNA:   3'- -UGUGcGCAGGGCAAGAcugGGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 10984 0.67 0.704808
Target:  5'- uGCGC-CGUCUCGUUCU---UCGCCCUg -3'
miRNA:   3'- -UGUGcGCAGGGCAAGAcugGGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 81120 0.67 0.685237
Target:  5'- cACACGCGuacaucacgaccUCCCcc-CUGGCCCGUagcuuaCCCa -3'
miRNA:   3'- -UGUGCGC------------AGGGcaaGACUGGGCG------GGG- -5'
2872 5' -59.9 NC_001493.1 + 30315 0.67 0.685237
Target:  5'- gACACGauCGcCCCG-UCcGACCCGauccCCCCg -3'
miRNA:   3'- -UGUGC--GCaGGGCaAGaCUGGGC----GGGG- -5'
2872 5' -59.9 NC_001493.1 + 29125 0.68 0.615846
Target:  5'- -aGCGCGUCCUuUUUgguccgGGCCgUGCCCCc -3'
miRNA:   3'- ugUGCGCAGGGcAAGa-----CUGG-GCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 130203 0.7 0.527712
Target:  5'- aACACGUGUUCUGUuucuUCUGcACCC-CCCg -3'
miRNA:   3'- -UGUGCGCAGGGCA----AGAC-UGGGcGGGg -5'
2872 5' -59.9 NC_001493.1 + 14649 0.7 0.527712
Target:  5'- aACACGUGUUCUGUuucuUCUGcACCC-CCCg -3'
miRNA:   3'- -UGUGCGCAGGGCA----AGAC-UGGGcGGGg -5'
2872 5' -59.9 NC_001493.1 + 129711 0.7 0.518171
Target:  5'- -gACGCGcCCCGggUgacgaccucgUGACCCGgCCCu -3'
miRNA:   3'- ugUGCGCaGGGCaaG----------ACUGGGCgGGG- -5'
2872 5' -59.9 NC_001493.1 + 119012 0.7 0.518171
Target:  5'- gACugGCGUCCCGa---GGagCGCCCCa -3'
miRNA:   3'- -UGugCGCAGGGCaagaCUggGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 88104 0.68 0.635724
Target:  5'- gGCGC-CGaUCCCGUgagccaugaccUCgauaaacugGACCUGCCCCc -3'
miRNA:   3'- -UGUGcGC-AGGGCA-----------AGa--------CUGGGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 60437 0.68 0.625783
Target:  5'- -gGCGCGaUCCCcagUCUGACgCGUaCCCa -3'
miRNA:   3'- ugUGCGC-AGGGca-AGACUGgGCG-GGG- -5'
2872 5' -59.9 NC_001493.1 + 10792 0.69 0.537318
Target:  5'- -gGCGCGUCCCGagagUCUcGACCgCGgaggaCCCg -3'
miRNA:   3'- ugUGCGCAGGGCa---AGA-CUGG-GCg----GGG- -5'
2872 5' -59.9 NC_001493.1 + 126346 0.69 0.537318
Target:  5'- -gGCGCGUCCCGagagUCUcGACCgCGgaggaCCCg -3'
miRNA:   3'- ugUGCGCAGGGCa---AGA-CUGG-GCg----GGG- -5'
2872 5' -59.9 NC_001493.1 + 4407 1.1 0.001113
Target:  5'- gACACGCGUCCCGUUCUGACCCGCCCCc -3'
miRNA:   3'- -UGUGCGCAGGGCAAGACUGGGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 18590 0.66 0.761861
Target:  5'- cCGCGaggGUCCUccgggaaggGUUCcucagGGCUCGCCCCg -3'
miRNA:   3'- uGUGCg--CAGGG---------CAAGa----CUGGGCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.