miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28724 3' -53.6 NC_006146.1 + 8129 0.66 0.962915
Target:  5'- -aGGCcGCUAGGUGGCGgcauaGACAAUu -3'
miRNA:   3'- ugUCGaCGGUCUACCGUag---CUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 15878 0.7 0.853937
Target:  5'- uACAGCgUGCCGGAgggcucgcUGGCcUCGAgcCAGCa -3'
miRNA:   3'- -UGUCG-ACGGUCU--------ACCGuAGCU--GUUGc -5'
28724 3' -53.6 NC_006146.1 + 21356 0.71 0.78428
Target:  5'- -gGGCUGCCGGcgGGCuuccugccggucAUCGACAuccucaACGa -3'
miRNA:   3'- ugUCGACGGUCuaCCG------------UAGCUGU------UGC- -5'
28724 3' -53.6 NC_006146.1 + 27356 0.77 0.471432
Target:  5'- cGCGGCaagGCCGGggGGCGUCugGACAGCa -3'
miRNA:   3'- -UGUCGa--CGGUCuaCCGUAG--CUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 29760 0.68 0.904195
Target:  5'- cGCAGCUGCUGGAa-GCAUCgGGCAAa- -3'
miRNA:   3'- -UGUCGACGGUCUacCGUAG-CUGUUgc -5'
28724 3' -53.6 NC_006146.1 + 33094 0.68 0.922183
Target:  5'- uGCGGCUcuggggcaGCCGGGUGGC--CGcCGGCGg -3'
miRNA:   3'- -UGUCGA--------CGGUCUACCGuaGCuGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 33228 0.66 0.959342
Target:  5'- -gGGCaGCCGGGUGGC--CGcCGGCGg -3'
miRNA:   3'- ugUCGaCGGUCUACCGuaGCuGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 40438 0.66 0.969392
Target:  5'- gGCAGCgGCCccGUaGGCGggugCGGCAAUGg -3'
miRNA:   3'- -UGUCGaCGGucUA-CCGUa---GCUGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 46456 0.67 0.947226
Target:  5'- gGCGGCguagGCCGGAUGcGUGcCGACcAGCa -3'
miRNA:   3'- -UGUCGa---CGGUCUAC-CGUaGCUG-UUGc -5'
28724 3' -53.6 NC_006146.1 + 46589 0.66 0.959342
Target:  5'- aGCAGCgucaugGCCAcGAUGGgGUUGuCGGCc -3'
miRNA:   3'- -UGUCGa-----CGGU-CUACCgUAGCuGUUGc -5'
28724 3' -53.6 NC_006146.1 + 47670 0.66 0.962915
Target:  5'- cGCGGCgGCCAG--GGUcUCGugGAUGg -3'
miRNA:   3'- -UGUCGaCGGUCuaCCGuAGCugUUGC- -5'
28724 3' -53.6 NC_006146.1 + 47831 0.72 0.765271
Target:  5'- -gGGCUGCCAGAgcgcGGCucUCGAgGACc -3'
miRNA:   3'- ugUCGACGGUCUa---CCGu-AGCUgUUGc -5'
28724 3' -53.6 NC_006146.1 + 49176 0.66 0.955539
Target:  5'- aGCAGUUcCCGGAUGGUA-CGGCGGg- -3'
miRNA:   3'- -UGUCGAcGGUCUACCGUaGCUGUUgc -5'
28724 3' -53.6 NC_006146.1 + 49373 0.66 0.966263
Target:  5'- cGCAcgauCUGCUGGAUGGUGUCGcGCAGgCGg -3'
miRNA:   3'- -UGUc---GACGGUCUACCGUAGC-UGUU-GC- -5'
28724 3' -53.6 NC_006146.1 + 49486 0.66 0.955146
Target:  5'- cGCGGUgucgGCCAGGggcggcgUGGCAUCugGAuCGGCGg -3'
miRNA:   3'- -UGUCGa---CGGUCU-------ACCGUAG--CU-GUUGC- -5'
28724 3' -53.6 NC_006146.1 + 53166 0.7 0.853937
Target:  5'- uGCGGCggugGCCGGAaGGC-UCGGCcuCGg -3'
miRNA:   3'- -UGUCGa---CGGUCUaCCGuAGCUGuuGC- -5'
28724 3' -53.6 NC_006146.1 + 55659 0.7 0.853937
Target:  5'- aGCAGCcggaGCCAGgcGGCGUUGAaggcCAGCa -3'
miRNA:   3'- -UGUCGa---CGGUCuaCCGUAGCU----GUUGc -5'
28724 3' -53.6 NC_006146.1 + 55765 0.67 0.953145
Target:  5'- gGCGGCggGCCAGG-GGCAgCGAggccaccacgcuggcCAGCGa -3'
miRNA:   3'- -UGUCGa-CGGUCUaCCGUaGCU---------------GUUGC- -5'
28724 3' -53.6 NC_006146.1 + 60478 0.67 0.947226
Target:  5'- aGCGGUgagagGCCGGggGGCcagcuccccCGACGGCGa -3'
miRNA:   3'- -UGUCGa----CGGUCuaCCGua-------GCUGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 66495 0.66 0.966263
Target:  5'- uGCGGCaGCCGGAUG-CAcCGGcCGGCGu -3'
miRNA:   3'- -UGUCGaCGGUCUACcGUaGCU-GUUGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.