Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28724 | 3' | -53.6 | NC_006146.1 | + | 47831 | 0.72 | 0.765271 |
Target: 5'- -gGGCUGCCAGAgcgcGGCucUCGAgGACc -3' miRNA: 3'- ugUCGACGGUCUa---CCGu-AGCUgUUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 33228 | 0.66 | 0.959342 |
Target: 5'- -gGGCaGCCGGGUGGC--CGcCGGCGg -3' miRNA: 3'- ugUCGaCGGUCUACCGuaGCuGUUGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 47670 | 0.66 | 0.962915 |
Target: 5'- cGCGGCgGCCAG--GGUcUCGugGAUGg -3' miRNA: 3'- -UGUCGaCGGUCuaCCGuAGCugUUGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 67066 | 0.66 | 0.966263 |
Target: 5'- cACcuCUGCCAGAcgGGCcgagaagggGUCGGCGGCc -3' miRNA: 3'- -UGucGACGGUCUa-CCG---------UAGCUGUUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 53166 | 0.7 | 0.853937 |
Target: 5'- uGCGGCggugGCCGGAaGGC-UCGGCcuCGg -3' miRNA: 3'- -UGUCGa---CGGUCUaCCGuAGCUGuuGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 55659 | 0.7 | 0.853937 |
Target: 5'- aGCAGCcggaGCCAGgcGGCGUUGAaggcCAGCa -3' miRNA: 3'- -UGUCGa---CGGUCuaCCGUAGCU----GUUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 117247 | 0.69 | 0.897711 |
Target: 5'- aGCGGCcgggGCCAGG-GGgGUCGGCAGg- -3' miRNA: 3'- -UGUCGa---CGGUCUaCCgUAGCUGUUgc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 145951 | 0.68 | 0.910436 |
Target: 5'- aGCGGCUGCCguAGGUGGUcgCGuuGAa- -3' miRNA: 3'- -UGUCGACGG--UCUACCGuaGCugUUgc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 149824 | 0.67 | 0.93294 |
Target: 5'- -aGGCU-CCGGGUGGUGUgGGCGGCc -3' miRNA: 3'- ugUCGAcGGUCUACCGUAgCUGUUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 49486 | 0.66 | 0.955146 |
Target: 5'- cGCGGUgucgGCCAGGggcggcgUGGCAUCugGAuCGGCGg -3' miRNA: 3'- -UGUCGa---CGGUCU-------ACCGUAG--CU-GUUGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 46456 | 0.67 | 0.947226 |
Target: 5'- gGCGGCguagGCCGGAUGcGUGcCGACcAGCa -3' miRNA: 3'- -UGUCGa---CGGUCUAC-CGUaGCUG-UUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 134444 | 0.68 | 0.927685 |
Target: 5'- -aGGCUGUagccuuUAGAUGGCGUaacaGGCAACu -3' miRNA: 3'- ugUCGACG------GUCUACCGUAg---CUGUUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 112032 | 0.71 | 0.801814 |
Target: 5'- gACGGCUGUuucucguCAGGUGGgGUgGGCAGCu -3' miRNA: 3'- -UGUCGACG-------GUCUACCgUAgCUGUUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 112166 | 0.67 | 0.947226 |
Target: 5'- gGCGGCaUGUguGGUGGCAUUGGUggUGc -3' miRNA: 3'- -UGUCG-ACGguCUACCGUAGCUGuuGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 69696 | 0.71 | 0.802722 |
Target: 5'- -aGGCUGCCAGGUGG-AUCuuCAGCu -3' miRNA: 3'- ugUCGACGGUCUACCgUAGcuGUUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 33094 | 0.68 | 0.922183 |
Target: 5'- uGCGGCUcuggggcaGCCGGGUGGC--CGcCGGCGg -3' miRNA: 3'- -UGUCGA--------CGGUCUACCGuaGCuGUUGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 55765 | 0.67 | 0.953145 |
Target: 5'- gGCGGCggGCCAGG-GGCAgCGAggccaccacgcuggcCAGCGa -3' miRNA: 3'- -UGUCGa-CGGUCUaCCGUaGCU---------------GUUGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 46589 | 0.66 | 0.959342 |
Target: 5'- aGCAGCgucaugGCCAcGAUGGgGUUGuCGGCc -3' miRNA: 3'- -UGUCGa-----CGGU-CUACCgUAGCuGUUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 151392 | 0.7 | 0.845878 |
Target: 5'- cGCuGCUGCaggcgggGGAUGGCG-CGGCGGCa -3' miRNA: 3'- -UGuCGACGg------UCUACCGUaGCUGUUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 158886 | 0.69 | 0.861788 |
Target: 5'- gUAGCUGCCGGucucgGGCAcCGGaguCAGCGa -3' miRNA: 3'- uGUCGACGGUCua---CCGUaGCU---GUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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