miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28724 3' -53.6 NC_006146.1 + 47831 0.72 0.765271
Target:  5'- -gGGCUGCCAGAgcgcGGCucUCGAgGACc -3'
miRNA:   3'- ugUCGACGGUCUa---CCGu-AGCUgUUGc -5'
28724 3' -53.6 NC_006146.1 + 33228 0.66 0.959342
Target:  5'- -gGGCaGCCGGGUGGC--CGcCGGCGg -3'
miRNA:   3'- ugUCGaCGGUCUACCGuaGCuGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 47670 0.66 0.962915
Target:  5'- cGCGGCgGCCAG--GGUcUCGugGAUGg -3'
miRNA:   3'- -UGUCGaCGGUCuaCCGuAGCugUUGC- -5'
28724 3' -53.6 NC_006146.1 + 67066 0.66 0.966263
Target:  5'- cACcuCUGCCAGAcgGGCcgagaagggGUCGGCGGCc -3'
miRNA:   3'- -UGucGACGGUCUa-CCG---------UAGCUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 53166 0.7 0.853937
Target:  5'- uGCGGCggugGCCGGAaGGC-UCGGCcuCGg -3'
miRNA:   3'- -UGUCGa---CGGUCUaCCGuAGCUGuuGC- -5'
28724 3' -53.6 NC_006146.1 + 55659 0.7 0.853937
Target:  5'- aGCAGCcggaGCCAGgcGGCGUUGAaggcCAGCa -3'
miRNA:   3'- -UGUCGa---CGGUCuaCCGUAGCU----GUUGc -5'
28724 3' -53.6 NC_006146.1 + 117247 0.69 0.897711
Target:  5'- aGCGGCcgggGCCAGG-GGgGUCGGCAGg- -3'
miRNA:   3'- -UGUCGa---CGGUCUaCCgUAGCUGUUgc -5'
28724 3' -53.6 NC_006146.1 + 145951 0.68 0.910436
Target:  5'- aGCGGCUGCCguAGGUGGUcgCGuuGAa- -3'
miRNA:   3'- -UGUCGACGG--UCUACCGuaGCugUUgc -5'
28724 3' -53.6 NC_006146.1 + 149824 0.67 0.93294
Target:  5'- -aGGCU-CCGGGUGGUGUgGGCGGCc -3'
miRNA:   3'- ugUCGAcGGUCUACCGUAgCUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 49486 0.66 0.955146
Target:  5'- cGCGGUgucgGCCAGGggcggcgUGGCAUCugGAuCGGCGg -3'
miRNA:   3'- -UGUCGa---CGGUCU-------ACCGUAG--CU-GUUGC- -5'
28724 3' -53.6 NC_006146.1 + 46456 0.67 0.947226
Target:  5'- gGCGGCguagGCCGGAUGcGUGcCGACcAGCa -3'
miRNA:   3'- -UGUCGa---CGGUCUAC-CGUaGCUG-UUGc -5'
28724 3' -53.6 NC_006146.1 + 134444 0.68 0.927685
Target:  5'- -aGGCUGUagccuuUAGAUGGCGUaacaGGCAACu -3'
miRNA:   3'- ugUCGACG------GUCUACCGUAg---CUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 112032 0.71 0.801814
Target:  5'- gACGGCUGUuucucguCAGGUGGgGUgGGCAGCu -3'
miRNA:   3'- -UGUCGACG-------GUCUACCgUAgCUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 112166 0.67 0.947226
Target:  5'- gGCGGCaUGUguGGUGGCAUUGGUggUGc -3'
miRNA:   3'- -UGUCG-ACGguCUACCGUAGCUGuuGC- -5'
28724 3' -53.6 NC_006146.1 + 69696 0.71 0.802722
Target:  5'- -aGGCUGCCAGGUGG-AUCuuCAGCu -3'
miRNA:   3'- ugUCGACGGUCUACCgUAGcuGUUGc -5'
28724 3' -53.6 NC_006146.1 + 33094 0.68 0.922183
Target:  5'- uGCGGCUcuggggcaGCCGGGUGGC--CGcCGGCGg -3'
miRNA:   3'- -UGUCGA--------CGGUCUACCGuaGCuGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 55765 0.67 0.953145
Target:  5'- gGCGGCggGCCAGG-GGCAgCGAggccaccacgcuggcCAGCGa -3'
miRNA:   3'- -UGUCGa-CGGUCUaCCGUaGCU---------------GUUGC- -5'
28724 3' -53.6 NC_006146.1 + 46589 0.66 0.959342
Target:  5'- aGCAGCgucaugGCCAcGAUGGgGUUGuCGGCc -3'
miRNA:   3'- -UGUCGa-----CGGU-CUACCgUAGCuGUUGc -5'
28724 3' -53.6 NC_006146.1 + 151392 0.7 0.845878
Target:  5'- cGCuGCUGCaggcgggGGAUGGCG-CGGCGGCa -3'
miRNA:   3'- -UGuCGACGg------UCUACCGUaGCUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 158886 0.69 0.861788
Target:  5'- gUAGCUGCCGGucucgGGCAcCGGaguCAGCGa -3'
miRNA:   3'- uGUCGACGGUCua---CCGUaGCU---GUUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.