miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28724 3' -53.6 NC_006146.1 + 33094 0.68 0.922183
Target:  5'- uGCGGCUcuggggcaGCCGGGUGGC--CGcCGGCGg -3'
miRNA:   3'- -UGUCGA--------CGGUCUACCGuaGCuGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 145951 0.68 0.910436
Target:  5'- aGCGGCUGCCguAGGUGGUcgCGuuGAa- -3'
miRNA:   3'- -UGUCGACGG--UCUACCGuaGCugUUgc -5'
28724 3' -53.6 NC_006146.1 + 29760 0.68 0.904195
Target:  5'- cGCAGCUGCUGGAa-GCAUCgGGCAAa- -3'
miRNA:   3'- -UGUCGACGGUCUacCGUAG-CUGUUgc -5'
28724 3' -53.6 NC_006146.1 + 117247 0.69 0.897711
Target:  5'- aGCGGCcgggGCCAGG-GGgGUCGGCAGg- -3'
miRNA:   3'- -UGUCGa---CGGUCUaCCgUAGCUGUUgc -5'
28724 3' -53.6 NC_006146.1 + 104421 0.69 0.897711
Target:  5'- cCGGCUGCCgcauaccuacaAGGUGGaCAggGGCGGCGc -3'
miRNA:   3'- uGUCGACGG-----------UCUACC-GUagCUGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 110275 0.69 0.88403
Target:  5'- uGCAGagccccguCUGCCAuGAUGGCcUCGGCGuagGCGu -3'
miRNA:   3'- -UGUC--------GACGGU-CUACCGuAGCUGU---UGC- -5'
28724 3' -53.6 NC_006146.1 + 109129 0.69 0.88403
Target:  5'- -aGGCUGCCGucuugGGCAUCaGCAGCa -3'
miRNA:   3'- ugUCGACGGUcua--CCGUAGcUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 116842 0.69 0.876841
Target:  5'- cGCGGCgGCCAGGUGGgcccugaccacCGcCGACAugGc -3'
miRNA:   3'- -UGUCGaCGGUCUACC-----------GUaGCUGUugC- -5'
28724 3' -53.6 NC_006146.1 + 158886 0.69 0.861788
Target:  5'- gUAGCUGCCGGucucgGGCAcCGGaguCAGCGa -3'
miRNA:   3'- uGUCGACGGUCua---CCGUaGCU---GUUGC- -5'
28724 3' -53.6 NC_006146.1 + 55659 0.7 0.853937
Target:  5'- aGCAGCcggaGCCAGgcGGCGUUGAaggcCAGCa -3'
miRNA:   3'- -UGUCGa---CGGUCuaCCGUAGCU----GUUGc -5'
28724 3' -53.6 NC_006146.1 + 53166 0.7 0.853937
Target:  5'- uGCGGCggugGCCGGAaGGC-UCGGCcuCGg -3'
miRNA:   3'- -UGUCGa---CGGUCUaCCGuAGCUGuuGC- -5'
28724 3' -53.6 NC_006146.1 + 15878 0.7 0.853937
Target:  5'- uACAGCgUGCCGGAgggcucgcUGGCcUCGAgcCAGCa -3'
miRNA:   3'- -UGUCG-ACGGUCU--------ACCGuAGCU--GUUGc -5'
28724 3' -53.6 NC_006146.1 + 151392 0.7 0.845878
Target:  5'- cGCuGCUGCaggcgggGGAUGGCG-CGGCGGCa -3'
miRNA:   3'- -UGuCGACGg------UCUACCGUaGCUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 69696 0.71 0.802722
Target:  5'- -aGGCUGCCAGGUGG-AUCuuCAGCu -3'
miRNA:   3'- ugUCGACGGUCUACCgUAGcuGUUGc -5'
28724 3' -53.6 NC_006146.1 + 112032 0.71 0.801814
Target:  5'- gACGGCUGUuucucguCAGGUGGgGUgGGCAGCu -3'
miRNA:   3'- -UGUCGACG-------GUCUACCgUAgCUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 21356 0.71 0.78428
Target:  5'- -gGGCUGCCGGcgGGCuuccugccggucAUCGACAuccucaACGa -3'
miRNA:   3'- ugUCGACGGUCuaCCG------------UAGCUGU------UGC- -5'
28724 3' -53.6 NC_006146.1 + 47831 0.72 0.765271
Target:  5'- -gGGCUGCCAGAgcgcGGCucUCGAgGACc -3'
miRNA:   3'- ugUCGACGGUCUa---CCGu-AGCUgUUGc -5'
28724 3' -53.6 NC_006146.1 + 72196 0.72 0.725862
Target:  5'- cGCGGCgGCCGGAUgGGCGggaGAcCAGCGg -3'
miRNA:   3'- -UGUCGaCGGUCUA-CCGUag-CU-GUUGC- -5'
28724 3' -53.6 NC_006146.1 + 68325 0.73 0.685113
Target:  5'- -gGGCcGCgagaGGAUGGCGUCGAgGACGg -3'
miRNA:   3'- ugUCGaCGg---UCUACCGUAGCUgUUGC- -5'
28724 3' -53.6 NC_006146.1 + 101853 0.74 0.653001
Target:  5'- -gGGCUGCCgcaccacGGGUGGCGgggCGAgGACGg -3'
miRNA:   3'- ugUCGACGG-------UCUACCGUa--GCUgUUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.