miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28725 3' -46.8 NC_006146.1 + 126034 0.66 0.999962
Target:  5'- gCUGggCcggGAGGGACUgGGCUCCCuUGg -3'
miRNA:   3'- -GACuaGua-UUCUUUGA-CUGAGGGcAC- -5'
28725 3' -46.8 NC_006146.1 + 99851 0.66 0.999949
Target:  5'- aCUGGUCAUAucGGACUGugcCUUCCGa- -3'
miRNA:   3'- -GACUAGUAUucUUUGACu--GAGGGCac -5'
28725 3' -46.8 NC_006146.1 + 47739 0.67 0.999848
Target:  5'- -aGGUCuugGAGggGCUGGC-CCUGg- -3'
miRNA:   3'- gaCUAGua-UUCuuUGACUGaGGGCac -5'
28725 3' -46.8 NC_006146.1 + 67305 0.67 0.999803
Target:  5'- uCUGGU-----GAAACUGGCUUCUGUGa -3'
miRNA:   3'- -GACUAguauuCUUUGACUGAGGGCAC- -5'
28725 3' -46.8 NC_006146.1 + 91510 0.67 0.999803
Target:  5'- gCUGGUCAUuagccgcuguGGAAACgGACUCaaCGUGg -3'
miRNA:   3'- -GACUAGUAu---------UCUUUGaCUGAGg-GCAC- -5'
28725 3' -46.8 NC_006146.1 + 110028 0.68 0.999595
Target:  5'- cCUGAUCA-AAGAuggccucGCUGACcCCCGg- -3'
miRNA:   3'- -GACUAGUaUUCUu------UGACUGaGGGCac -5'
28725 3' -46.8 NC_006146.1 + 11995 0.68 0.999492
Target:  5'- -gGggCAgAAGAGcucGCUGACUCCgGUGc -3'
miRNA:   3'- gaCuaGUaUUCUU---UGACUGAGGgCAC- -5'
28725 3' -46.8 NC_006146.1 + 142447 0.68 0.999215
Target:  5'- uCUGGUUucUAAGcAGGCggugugguggGGCUCCCGUGg -3'
miRNA:   3'- -GACUAGu-AUUC-UUUGa---------CUGAGGGCAC- -5'
28725 3' -46.8 NC_006146.1 + 83930 0.69 0.999034
Target:  5'- -aGAcuUCcu--GAAACUGACUCCCGa- -3'
miRNA:   3'- gaCU--AGuauuCUUUGACUGAGGGCac -5'
28725 3' -46.8 NC_006146.1 + 164496 0.69 0.998818
Target:  5'- aUGAUgAUAacAGAAACUccUUCCCGUGg -3'
miRNA:   3'- gACUAgUAU--UCUUUGAcuGAGGGCAC- -5'
28725 3' -46.8 NC_006146.1 + 168607 0.69 0.998818
Target:  5'- aCUG-UCGgaagGAGGGcCUGGCUCCgGUGa -3'
miRNA:   3'- -GACuAGUa---UUCUUuGACUGAGGgCAC- -5'
28725 3' -46.8 NC_006146.1 + 49494 0.69 0.998562
Target:  5'- uUGGUCAUGGGcAGACU--CUCCCGg- -3'
miRNA:   3'- gACUAGUAUUC-UUUGAcuGAGGGCac -5'
28725 3' -46.8 NC_006146.1 + 169036 1.1 0.02381
Target:  5'- cCUGAUCAUAAGAAACUGACUCCCGUGu -3'
miRNA:   3'- -GACUAGUAUUCUUUGACUGAGGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.