Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28725 | 3' | -46.8 | NC_006146.1 | + | 126034 | 0.66 | 0.999962 |
Target: 5'- gCUGggCcggGAGGGACUgGGCUCCCuUGg -3' miRNA: 3'- -GACuaGua-UUCUUUGA-CUGAGGGcAC- -5' |
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28725 | 3' | -46.8 | NC_006146.1 | + | 99851 | 0.66 | 0.999949 |
Target: 5'- aCUGGUCAUAucGGACUGugcCUUCCGa- -3' miRNA: 3'- -GACUAGUAUucUUUGACu--GAGGGCac -5' |
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28725 | 3' | -46.8 | NC_006146.1 | + | 47739 | 0.67 | 0.999848 |
Target: 5'- -aGGUCuugGAGggGCUGGC-CCUGg- -3' miRNA: 3'- gaCUAGua-UUCuuUGACUGaGGGCac -5' |
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28725 | 3' | -46.8 | NC_006146.1 | + | 67305 | 0.67 | 0.999803 |
Target: 5'- uCUGGU-----GAAACUGGCUUCUGUGa -3' miRNA: 3'- -GACUAguauuCUUUGACUGAGGGCAC- -5' |
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28725 | 3' | -46.8 | NC_006146.1 | + | 91510 | 0.67 | 0.999803 |
Target: 5'- gCUGGUCAUuagccgcuguGGAAACgGACUCaaCGUGg -3' miRNA: 3'- -GACUAGUAu---------UCUUUGaCUGAGg-GCAC- -5' |
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28725 | 3' | -46.8 | NC_006146.1 | + | 110028 | 0.68 | 0.999595 |
Target: 5'- cCUGAUCA-AAGAuggccucGCUGACcCCCGg- -3' miRNA: 3'- -GACUAGUaUUCUu------UGACUGaGGGCac -5' |
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28725 | 3' | -46.8 | NC_006146.1 | + | 11995 | 0.68 | 0.999492 |
Target: 5'- -gGggCAgAAGAGcucGCUGACUCCgGUGc -3' miRNA: 3'- gaCuaGUaUUCUU---UGACUGAGGgCAC- -5' |
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28725 | 3' | -46.8 | NC_006146.1 | + | 142447 | 0.68 | 0.999215 |
Target: 5'- uCUGGUUucUAAGcAGGCggugugguggGGCUCCCGUGg -3' miRNA: 3'- -GACUAGu-AUUC-UUUGa---------CUGAGGGCAC- -5' |
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28725 | 3' | -46.8 | NC_006146.1 | + | 83930 | 0.69 | 0.999034 |
Target: 5'- -aGAcuUCcu--GAAACUGACUCCCGa- -3' miRNA: 3'- gaCU--AGuauuCUUUGACUGAGGGCac -5' |
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28725 | 3' | -46.8 | NC_006146.1 | + | 168607 | 0.69 | 0.998818 |
Target: 5'- aCUG-UCGgaagGAGGGcCUGGCUCCgGUGa -3' miRNA: 3'- -GACuAGUa---UUCUUuGACUGAGGgCAC- -5' |
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28725 | 3' | -46.8 | NC_006146.1 | + | 164496 | 0.69 | 0.998818 |
Target: 5'- aUGAUgAUAacAGAAACUccUUCCCGUGg -3' miRNA: 3'- gACUAgUAU--UCUUUGAcuGAGGGCAC- -5' |
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28725 | 3' | -46.8 | NC_006146.1 | + | 49494 | 0.69 | 0.998562 |
Target: 5'- uUGGUCAUGGGcAGACU--CUCCCGg- -3' miRNA: 3'- gACUAGUAUUC-UUUGAcuGAGGGCac -5' |
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28725 | 3' | -46.8 | NC_006146.1 | + | 169036 | 1.1 | 0.02381 |
Target: 5'- cCUGAUCAUAAGAAACUGACUCCCGUGu -3' miRNA: 3'- -GACUAGUAUUCUUUGACUGAGGGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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