miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 3' -57.9 NC_006146.1 + 14794 0.66 0.84256
Target:  5'- cGGCUGaggGGAAGGAGaGGCCggccgGGC-Cg -3'
miRNA:   3'- cUUGACag-CCUUCCUC-CCGGa----CCGaG- -5'
28726 3' -57.9 NC_006146.1 + 126030 0.66 0.84256
Target:  5'- -uGCUGcUGGGccGGGAGGGaCUgGGCUCc -3'
miRNA:   3'- cuUGACaGCCU--UCCUCCC-GGaCCGAG- -5'
28726 3' -57.9 NC_006146.1 + 51672 0.66 0.850485
Target:  5'- aGAACUGaaGGggGGcgacGGGGCgggGGCUg -3'
miRNA:   3'- -CUUGACagCCuuCC----UCCCGga-CCGAg -5'
28726 3' -57.9 NC_006146.1 + 169123 0.66 0.834448
Target:  5'- ---aUGUCGG--GGAGGGCCcggGGC-Cg -3'
miRNA:   3'- cuugACAGCCuuCCUCCCGGa--CCGaG- -5'
28726 3' -57.9 NC_006146.1 + 49665 0.66 0.817688
Target:  5'- cGAAC--UCGGGcAGGGGGGCUaUGGCg- -3'
miRNA:   3'- -CUUGacAGCCU-UCCUCCCGG-ACCGag -5'
28726 3' -57.9 NC_006146.1 + 65012 0.66 0.826155
Target:  5'- --uUUGUUGGGAaGGGGGCgCUGGC-Cg -3'
miRNA:   3'- cuuGACAGCCUUcCUCCCG-GACCGaG- -5'
28726 3' -57.9 NC_006146.1 + 167259 0.66 0.834448
Target:  5'- ---aUGUCGG--GGAGGGCCcggGGC-Cg -3'
miRNA:   3'- cuugACAGCCuuCCUCCCGGa--CCGaG- -5'
28726 3' -57.9 NC_006146.1 + 170055 0.66 0.834448
Target:  5'- ---aUGUCGG--GGAGGGCCcggGGC-Cg -3'
miRNA:   3'- cuugACAGCCuuCCUCCCGGa--CCGaG- -5'
28726 3' -57.9 NC_006146.1 + 168191 0.66 0.834448
Target:  5'- ---aUGUCGG--GGAGGGCCcggGGC-Cg -3'
miRNA:   3'- cuugACAGCCuuCCUCCCGGa--CCGaG- -5'
28726 3' -57.9 NC_006146.1 + 92227 0.66 0.816832
Target:  5'- -uGCUGcUGGggGGcGGGCCcggccugUGGCUg -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGG-------ACCGAg -5'
28726 3' -57.9 NC_006146.1 + 92018 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92048 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 100009 0.66 0.84256
Target:  5'- gGAGCgggcacGUCGGGAGGcggcGGGGUCcgcGGCUUc -3'
miRNA:   3'- -CUUGa-----CAGCCUUCC----UCCCGGa--CCGAG- -5'
28726 3' -57.9 NC_006146.1 + 92317 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92287 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92257 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92197 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92167 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92137 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92107 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.