miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 3' -57.9 NC_006146.1 + 168604 1.08 0.002283
Target:  5'- gGAACUGUCGGAAGGAGGGCCUGGCUCc -3'
miRNA:   3'- -CUUGACAGCCUUCCUCCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 41030 0.77 0.267839
Target:  5'- aGAGCcGU-GGGAGGAGGGCCUaggacagcuuccgagGGCUCg -3'
miRNA:   3'- -CUUGaCAgCCUUCCUCCCGGA---------------CCGAG- -5'
28726 3' -57.9 NC_006146.1 + 154881 0.75 0.34895
Target:  5'- aGAGCccGUCGGggGGcAGGGCCUcgcccgGGCUg -3'
miRNA:   3'- -CUUGa-CAGCCuuCC-UCCCGGA------CCGAg -5'
28726 3' -57.9 NC_006146.1 + 26186 0.74 0.397293
Target:  5'- gGGAUuagGUCGGAGGGGGcGGCCUGGg-- -3'
miRNA:   3'- -CUUGa--CAGCCUUCCUC-CCGGACCgag -5'
28726 3' -57.9 NC_006146.1 + 49065 0.73 0.457925
Target:  5'- gGGGCUGgaucGAAGGAGGGCUgaggcuccggcugUGGCUCa -3'
miRNA:   3'- -CUUGACagc-CUUCCUCCCGG-------------ACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 141451 0.7 0.614902
Target:  5'- gGGAgUGgccagggaGGAcGGAGGGCCUGGCc- -3'
miRNA:   3'- -CUUgACag------CCUuCCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 153762 0.7 0.614902
Target:  5'- gGGAgUGgccagggaGGAcGGAGGGCCUGGCc- -3'
miRNA:   3'- -CUUgACag------CCUuCCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 156840 0.7 0.614902
Target:  5'- gGGAgUGgccagggaGGAcGGAGGGCCUGGCc- -3'
miRNA:   3'- -CUUgACag------CCUuCCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 147607 0.7 0.614902
Target:  5'- gGGAgUGgccagggaGGAcGGAGGGCCUGGCc- -3'
miRNA:   3'- -CUUgACag------CCUuCCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 144529 0.7 0.614902
Target:  5'- gGGAgUGgccagggaGGAcGGAGGGCCUGGCc- -3'
miRNA:   3'- -CUUgACag------CCUuCCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 113961 0.7 0.625033
Target:  5'- uGAACUGgaaGAGGGGGGuGCCcgggGGCUCc -3'
miRNA:   3'- -CUUGACagcCUUCCUCC-CGGa---CCGAG- -5'
28726 3' -57.9 NC_006146.1 + 114343 0.7 0.635169
Target:  5'- --cCUGaCGGAGGuggacGGGGGCCUGGCcCg -3'
miRNA:   3'- cuuGACaGCCUUC-----CUCCCGGACCGaG- -5'
28726 3' -57.9 NC_006146.1 + 48200 0.7 0.63517
Target:  5'- cGACuUGgcaucCGGGgacuGGAGGGCCUGGCg- -3'
miRNA:   3'- cUUG-ACa----GCCUu---CCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 95522 0.7 0.63517
Target:  5'- gGAGCUGUCGGGugc-GGcGCCUGGC-Ca -3'
miRNA:   3'- -CUUGACAGCCUuccuCC-CGGACCGaG- -5'
28726 3' -57.9 NC_006146.1 + 134581 0.69 0.64429
Target:  5'- uGAGCUGUgcaguuuugauugUGGggGGAGGGCuCUcuuaucuaGGCUa -3'
miRNA:   3'- -CUUGACA-------------GCCuuCCUCCCG-GA--------CCGAg -5'
28726 3' -57.9 NC_006146.1 + 167380 0.69 0.654416
Target:  5'- gGGGCUGagGGGgcucccgagggcgGGGccGGGGCCUGGCg- -3'
miRNA:   3'- -CUUGACagCCU-------------UCC--UCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 168312 0.69 0.654416
Target:  5'- gGGGCUGagGGGgcucccgagggcgGGGccGGGGCCUGGCg- -3'
miRNA:   3'- -CUUGACagCCU-------------UCC--UCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 170175 0.69 0.654416
Target:  5'- gGGGCUGagGGGgcucccgagggcgGGGccGGGGCCUGGCg- -3'
miRNA:   3'- -CUUGACagCCU-------------UCC--UCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 169244 0.69 0.654416
Target:  5'- gGGGCUGagGGGgcucccgagggcgGGGccGGGGCCUGGCg- -3'
miRNA:   3'- -CUUGACagCCU-------------UCC--UCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 64240 0.69 0.655427
Target:  5'- --cCUGggcCGGGgcGGGAgGGGCgUGGCUCg -3'
miRNA:   3'- cuuGACa--GCCU--UCCU-CCCGgACCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.