miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 3' -57.9 NC_006146.1 + 14112 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 14794 0.66 0.84256
Target:  5'- cGGCUGaggGGAAGGAGaGGCCggccgGGC-Cg -3'
miRNA:   3'- cUUGACag-CCUUCCUC-CCGGa----CCGaG- -5'
28726 3' -57.9 NC_006146.1 + 17190 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 20268 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 23346 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 26186 0.74 0.397293
Target:  5'- gGGAUuagGUCGGAGGGGGcGGCCUGGg-- -3'
miRNA:   3'- -CUUGa--CAGCCUUCCUC-CCGGACCgag -5'
28726 3' -57.9 NC_006146.1 + 26424 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 29502 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 39967 0.67 0.78225
Target:  5'- cGGCUGg-GGAAGGAGaGGCUgaGGCUg -3'
miRNA:   3'- cUUGACagCCUUCCUC-CCGGa-CCGAg -5'
28726 3' -57.9 NC_006146.1 + 41030 0.77 0.267839
Target:  5'- aGAGCcGU-GGGAGGAGGGCCUaggacagcuuccgagGGCUCg -3'
miRNA:   3'- -CUUGaCAgCCUUCCUCCCGGA---------------CCGAG- -5'
28726 3' -57.9 NC_006146.1 + 43996 0.67 0.791329
Target:  5'- aGGCUGaguaggcCGGAgguggaugugGGGAGGGUCUuuuGGCUCa -3'
miRNA:   3'- cUUGACa------GCCU----------UCCUCCCGGA---CCGAG- -5'
28726 3' -57.9 NC_006146.1 + 44760 0.69 0.655427
Target:  5'- cGGGCUcUCGGggGaGAGGguGCCgugccgGGCUCa -3'
miRNA:   3'- -CUUGAcAGCCuuC-CUCC--CGGa-----CCGAG- -5'
28726 3' -57.9 NC_006146.1 + 46239 0.68 0.73505
Target:  5'- ----aGcCGGAGGGAGGGCC-GGUg- -3'
miRNA:   3'- cuugaCaGCCUUCCUCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 48200 0.7 0.63517
Target:  5'- cGACuUGgcaucCGGGgacuGGAGGGCCUGGCg- -3'
miRNA:   3'- cUUG-ACa----GCCUu---CCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 49065 0.73 0.457925
Target:  5'- gGGGCUGgaucGAAGGAGGGCUgaggcuccggcugUGGCUCa -3'
miRNA:   3'- -CUUGACagc-CUUCCUCCCGG-------------ACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 49665 0.66 0.817688
Target:  5'- cGAAC--UCGGGcAGGGGGGCUaUGGCg- -3'
miRNA:   3'- -CUUGacAGCCU-UCCUCCCGG-ACCGag -5'
28726 3' -57.9 NC_006146.1 + 51672 0.66 0.850485
Target:  5'- aGAACUGaaGGggGGcgacGGGGCgggGGCUg -3'
miRNA:   3'- -CUUGACagCCuuCC----UCCCGga-CCGAg -5'
28726 3' -57.9 NC_006146.1 + 51832 0.68 0.715493
Target:  5'- gGGGCggcgUGGAGGGgggcucGGGGCCUGGCcCg -3'
miRNA:   3'- -CUUGaca-GCCUUCC------UCCCGGACCGaG- -5'
28726 3' -57.9 NC_006146.1 + 57055 0.66 0.826155
Target:  5'- aGggUUGaggCGGGAGG-GGGCCUGacGCg- -3'
miRNA:   3'- -CuuGACa--GCCUUCCuCCCGGAC--CGag -5'
28726 3' -57.9 NC_006146.1 + 64240 0.69 0.655427
Target:  5'- --cCUGggcCGGGgcGGGAgGGGCgUGGCUCg -3'
miRNA:   3'- cuuGACa--GCCU--UCCU-CCCGgACCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.