miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 3' -57.9 NC_006146.1 + 41030 0.77 0.267839
Target:  5'- aGAGCcGU-GGGAGGAGGGCCUaggacagcuuccgagGGCUCg -3'
miRNA:   3'- -CUUGaCAgCCUUCCUCCCGGA---------------CCGAG- -5'
28726 3' -57.9 NC_006146.1 + 46239 0.68 0.73505
Target:  5'- ----aGcCGGAGGGAGGGCC-GGUg- -3'
miRNA:   3'- cuugaCaGCCUUCCUCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 124178 0.67 0.773039
Target:  5'- aGAGCUGauUCGcAAGGGGGGCgCUGaGCa- -3'
miRNA:   3'- -CUUGAC--AGCcUUCCUCCCG-GAC-CGag -5'
28726 3' -57.9 NC_006146.1 + 51672 0.66 0.850485
Target:  5'- aGAACUGaaGGggGGcgacGGGGCgggGGCUg -3'
miRNA:   3'- -CUUGACagCCuuCC----UCCCGga-CCGAg -5'
28726 3' -57.9 NC_006146.1 + 134581 0.69 0.64429
Target:  5'- uGAGCUGUgcaguuuugauugUGGggGGAGGGCuCUcuuaucuaGGCUa -3'
miRNA:   3'- -CUUGACA-------------GCCuuCCUCCCG-GA--------CCGAg -5'
28726 3' -57.9 NC_006146.1 + 167380 0.69 0.654416
Target:  5'- gGGGCUGagGGGgcucccgagggcgGGGccGGGGCCUGGCg- -3'
miRNA:   3'- -CUUGACagCCU-------------UCC--UCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 169244 0.69 0.654416
Target:  5'- gGGGCUGagGGGgcucccgagggcgGGGccGGGGCCUGGCg- -3'
miRNA:   3'- -CUUGACagCCU-------------UCC--UCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 170175 0.69 0.654416
Target:  5'- gGGGCUGagGGGgcucccgagggcgGGGccGGGGCCUGGCg- -3'
miRNA:   3'- -CUUGACagCCU-------------UCC--UCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 17190 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 51832 0.68 0.715493
Target:  5'- gGGGCggcgUGGAGGGgggcucGGGGCCUGGCcCg -3'
miRNA:   3'- -CUUGaca-GCCUUCC------UCCCGGACCGaG- -5'
28726 3' -57.9 NC_006146.1 + 23346 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 14112 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 154881 0.75 0.34895
Target:  5'- aGAGCccGUCGGggGGcAGGGCCUcgcccgGGCUg -3'
miRNA:   3'- -CUUGa-CAGCCuuCC-UCCCGGA------CCGAg -5'
28726 3' -57.9 NC_006146.1 + 26424 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 48200 0.7 0.63517
Target:  5'- cGACuUGgcaucCGGGgacuGGAGGGCCUGGCg- -3'
miRNA:   3'- cUUG-ACa----GCCUu---CCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 150501 0.69 0.665533
Target:  5'- --cCUGUCGGAGgcGGAGGGCaugGGUa- -3'
miRNA:   3'- cuuGACAGCCUU--CCUCCCGga-CCGag -5'
28726 3' -57.9 NC_006146.1 + 29502 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 137770 0.67 0.763705
Target:  5'- -cGCUGgucCGGuccGGGuGGGCCUGGUcCg -3'
miRNA:   3'- cuUGACa--GCCu--UCCuCCCGGACCGaG- -5'
28726 3' -57.9 NC_006146.1 + 95522 0.7 0.63517
Target:  5'- gGAGCUGUCGGGugc-GGcGCCUGGC-Ca -3'
miRNA:   3'- -CUUGACAGCCUuccuCC-CGGACCGaG- -5'
28726 3' -57.9 NC_006146.1 + 168312 0.69 0.654416
Target:  5'- gGGGCUGagGGGgcucccgagggcgGGGccGGGGCCUGGCg- -3'
miRNA:   3'- -CUUGACagCCU-------------UCC--UCCCGGACCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.