miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 3' -57.9 NC_006146.1 + 92287 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92227 0.66 0.816832
Target:  5'- -uGCUGcUGGggGGcGGGCCcggccugUGGCUg -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGG-------ACCGAg -5'
28726 3' -57.9 NC_006146.1 + 151896 0.67 0.79133
Target:  5'- gGAAC--UCGaGggGGcccccacuGGGGUCUGGCUCc -3'
miRNA:   3'- -CUUGacAGC-CuuCC--------UCCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 118994 0.67 0.79133
Target:  5'- gGAGCUGggGGGAGGAagcgucaccGGGCUuaagGGCUUc -3'
miRNA:   3'- -CUUGACagCCUUCCU---------CCCGGa---CCGAG- -5'
28726 3' -57.9 NC_006146.1 + 43996 0.67 0.791329
Target:  5'- aGGCUGaguaggcCGGAgguggaugugGGGAGGGUCUuuuGGCUCa -3'
miRNA:   3'- cUUGACa------GCCU----------UCCUCCCGGA---CCGAG- -5'
28726 3' -57.9 NC_006146.1 + 39967 0.67 0.78225
Target:  5'- cGGCUGg-GGAAGGAGaGGCUgaGGCUg -3'
miRNA:   3'- cUUGACagCCUUCCUC-CCGGa-CCGAg -5'
28726 3' -57.9 NC_006146.1 + 124178 0.67 0.773039
Target:  5'- aGAGCUGauUCGcAAGGGGGGCgCUGaGCa- -3'
miRNA:   3'- -CUUGAC--AGCcUUCCUCCCG-GAC-CGag -5'
28726 3' -57.9 NC_006146.1 + 137770 0.67 0.763705
Target:  5'- -cGCUGgucCGGuccGGGuGGGCCUGGUcCg -3'
miRNA:   3'- cuUGACa--GCCu--UCCuCCCGGACCGaG- -5'
28726 3' -57.9 NC_006146.1 + 46239 0.68 0.73505
Target:  5'- ----aGcCGGAGGGAGGGCC-GGUg- -3'
miRNA:   3'- cuugaCaGCCUUCCUCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 132063 0.68 0.734079
Target:  5'- -cGCUGcUGGAcgugagcugccccAGGcucAGGGCCUGGCUg -3'
miRNA:   3'- cuUGACaGCCU-------------UCC---UCCCGGACCGAg -5'
28726 3' -57.9 NC_006146.1 + 89962 0.68 0.72531
Target:  5'- uGGAUUGUCaGAu---GGGCCUGGCUg -3'
miRNA:   3'- -CUUGACAGcCUuccuCCCGGACCGAg -5'
28726 3' -57.9 NC_006146.1 + 51832 0.68 0.715493
Target:  5'- gGGGCggcgUGGAGGGgggcucGGGGCCUGGCcCg -3'
miRNA:   3'- -CUUGaca-GCCUUCC------UCCCGGACCGaG- -5'
28726 3' -57.9 NC_006146.1 + 20268 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 26424 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 23346 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 29502 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 17190 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 14112 0.69 0.669568
Target:  5'- ----cGUCcaGGggGGAcuuuaggugacccucGGGCCUGGCUUa -3'
miRNA:   3'- cuugaCAG--CCuuCCU---------------CCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 112508 0.69 0.665533
Target:  5'- uAGCgGUCcaGGGGccgguGGAGGGCCUGGgUCa -3'
miRNA:   3'- cUUGaCAG--CCUU-----CCUCCCGGACCgAG- -5'
28726 3' -57.9 NC_006146.1 + 150685 0.69 0.665533
Target:  5'- gGGAgUGgccaggGGGAcGGAGGGCCUGGCc- -3'
miRNA:   3'- -CUUgACag----CCUU-CCUCCCGGACCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.