Results 121 - 140 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 111908 | 0.69 | 0.954724 |
Target: 5'- gGGAGgCAGA-UGUUGGCCAGGUUgCa -3' miRNA: 3'- gUUUCgGUUUgACAGCCGGUUCGAgG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 113039 | 0.69 | 0.954724 |
Target: 5'- --cGGCCAGGacGUCGGCCucgGGgUCCa -3' miRNA: 3'- guuUCGGUUUgaCAGCCGGu--UCgAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 77546 | 0.69 | 0.957868 |
Target: 5'- -cGGGCCAcguguacguggcGCUGUCcagGGCCAGGCacUCCa -3' miRNA: 3'- guUUCGGUu-----------UGACAG---CCGGUUCG--AGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 11443 | 0.69 | 0.946182 |
Target: 5'- --uGGCCAAGgUGgCGGCCcucaagGAGUUCCc -3' miRNA: 3'- guuUCGGUUUgACaGCCGG------UUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 123259 | 0.7 | 0.936641 |
Target: 5'- -uGGGCCGGGCcG-CGGCCAgagacGGCUCg -3' miRNA: 3'- guUUCGGUUUGaCaGCCGGU-----UCGAGg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 29607 | 0.7 | 0.920427 |
Target: 5'- --cAGCCAGGCUGaacCcGCCAAuGCUCCc -3' miRNA: 3'- guuUCGGUUUGACa--GcCGGUU-CGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 111627 | 0.7 | 0.931491 |
Target: 5'- --cAGCCcagguccgcgaAGAC-GUCGGCCAGGC-CCu -3' miRNA: 3'- guuUCGG-----------UUUGaCAGCCGGUUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 120538 | 0.7 | 0.941537 |
Target: 5'- --cGGCgGGACUGcUGGCCAAGaUCCc -3' miRNA: 3'- guuUCGgUUUGACaGCCGGUUCgAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 67037 | 0.7 | 0.941537 |
Target: 5'- gGGAGCC-GACaGUCGGCCGGGaCggagaCCa -3' miRNA: 3'- gUUUCGGuUUGaCAGCCGGUUC-Ga----GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 142100 | 0.7 | 0.940095 |
Target: 5'- gAAAGCUggGCUGccccaagugagcccUCGGCCccaggguauGCUCCc -3' miRNA: 3'- gUUUCGGuuUGAC--------------AGCCGGuu-------CGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 41356 | 0.7 | 0.936641 |
Target: 5'- cCAGGGCCuGGCgGUggUGGCCGuGGCUCUg -3' miRNA: 3'- -GUUUCGGuUUGaCA--GCCGGU-UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 128141 | 0.7 | 0.931491 |
Target: 5'- ---cGCCugcacCUGUCGGCCcuGCUgCCg -3' miRNA: 3'- guuuCGGuuu--GACAGCCGGuuCGA-GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 156919 | 0.7 | 0.941537 |
Target: 5'- cCGAGGCCuGGgUGgCGGCgcugaCGGGCUCCg -3' miRNA: 3'- -GUUUCGGuUUgACaGCCG-----GUUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 46741 | 0.7 | 0.920427 |
Target: 5'- gGAGGCCAcGCU---GGCCAGGgUCCu -3' miRNA: 3'- gUUUCGGUuUGAcagCCGGUUCgAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 99385 | 0.7 | 0.931491 |
Target: 5'- uGAGGCCcagGAGCgaGUCGGCCAGGggggugCCg -3' miRNA: 3'- gUUUCGG---UUUGa-CAGCCGGUUCga----GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 109995 | 0.7 | 0.931491 |
Target: 5'- cUAAGGCCGggAugUGg-GGCCucaGGGCUCCg -3' miRNA: 3'- -GUUUCGGU--UugACagCCGG---UUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 154647 | 0.71 | 0.888346 |
Target: 5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3' miRNA: 3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 18994 | 0.71 | 0.895259 |
Target: 5'- cCGGAGCCAGACcccagUGggGGCCcccucGAGUUCCa -3' miRNA: 3'- -GUUUCGGUUUG-----ACagCCGG-----UUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 157724 | 0.71 | 0.888346 |
Target: 5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3' miRNA: 3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 151569 | 0.71 | 0.888346 |
Target: 5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3' miRNA: 3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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