miRNA display CGI


Results 121 - 140 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 145652 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 142574 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 3877 0.67 0.98384
Target:  5'- aGAAGCU--GCUGgucUCGGCgAGGC-CCa -3'
miRNA:   3'- gUUUCGGuuUGAC---AGCCGgUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 73508 0.67 0.98514
Target:  5'- gCGGGGUCAcGCgcaggcuuacuuuuUGcaUGGCCAGGCUCCg -3'
miRNA:   3'- -GUUUCGGUuUG--------------ACa-GCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 160605 0.67 0.985671
Target:  5'- ---uGCCcccgagGUCGGCCGccuggcaugccAGCUCCg -3'
miRNA:   3'- guuuCGGuuuga-CAGCCGGU-----------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 60789 0.67 0.985671
Target:  5'- gGGAGCCGGACcagGUCcagGGCCu-GgUCCg -3'
miRNA:   3'- gUUUCGGUUUGa--CAG---CCGGuuCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 74572 0.67 0.985671
Target:  5'- ----aCCGGGCUGUCgaaGGUCAcuGCUCCg -3'
miRNA:   3'- guuucGGUUUGACAG---CCGGUu-CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 55682 0.67 0.985671
Target:  5'- gAAGGCCAGcACgGgcaCGGCCGccgccggggGGCUCUg -3'
miRNA:   3'- gUUUCGGUU-UGaCa--GCCGGU---------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 38285 0.67 0.985671
Target:  5'- -cGGGCCAcACUGcCGGCCcu-UUCCa -3'
miRNA:   3'- guUUCGGUuUGACaGCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 20707 0.67 0.987339
Target:  5'- gCAAGGCCAuuaagaAGCUGcuggCGGCCugcGAGgaCCc -3'
miRNA:   3'- -GUUUCGGU------UUGACa---GCCGG---UUCgaGG- -5'
28726 5' -51.2 NC_006146.1 + 25420 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 16186 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 75635 0.67 0.987339
Target:  5'- gAAGGCCAuauAGCUugcagaGGCCAAGgaCCg -3'
miRNA:   3'- gUUUCGGU---UUGAcag---CCGGUUCgaGG- -5'
28726 5' -51.2 NC_006146.1 + 43741 0.67 0.987339
Target:  5'- -cGGGCCAggUgGUCGcgcaugacGCCGuccAGCUCCa -3'
miRNA:   3'- guUUCGGUuuGaCAGC--------CGGU---UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 19264 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 13108 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 22342 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 28498 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 137039 0.67 0.987339
Target:  5'- gGAGGCCGGG-UGggGGCCugGGGUUCCg -3'
miRNA:   3'- gUUUCGGUUUgACagCCGG--UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 13566 0.67 0.987339
Target:  5'- ---cGCCGGGCUGcgcaagcaGGCCGggGGCUCa -3'
miRNA:   3'- guuuCGGUUUGACag------CCGGU--UCGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.