miRNA display CGI


Results 141 - 160 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 13566 0.67 0.987339
Target:  5'- ---cGCCGGGCUGcgcaagcaGGCCGggGGCUCa -3'
miRNA:   3'- guuuCGGUUUGACag------CCGGU--UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 137039 0.67 0.987339
Target:  5'- gGAGGCCGGG-UGggGGCCugGGGUUCCg -3'
miRNA:   3'- gUUUCGGUUUgACagCCGG--UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 127420 0.66 0.988709
Target:  5'- cCGGAGCCGGugUcaaCGGCCGccgaggaGGCUgCCg -3'
miRNA:   3'- -GUUUCGGUUugAca-GCCGGU-------UCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 25177 0.66 0.988853
Target:  5'- gCGAGGCUggguGGCUGggcaGGCCGGGuCUCg -3'
miRNA:   3'- -GUUUCGGu---UUGACag--CCGGUUC-GAGg -5'
28726 5' -51.2 NC_006146.1 + 78561 0.66 0.988853
Target:  5'- -cGAGCCGccccauaucAGCUGccccaGGCCGGGC-CCg -3'
miRNA:   3'- guUUCGGU---------UUGACag---CCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 39545 0.66 0.988853
Target:  5'- aAAAGUgGAGCUGgaugucaaUGGCCAGGaUCCu -3'
miRNA:   3'- gUUUCGgUUUGACa-------GCCGGUUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 28255 0.66 0.988853
Target:  5'- gCGAGGCUggguGGCUGggcaGGCCGGGuCUCg -3'
miRNA:   3'- -GUUUCGGu---UUGACag--CCGGUUC-GAGg -5'
28726 5' -51.2 NC_006146.1 + 19021 0.66 0.988853
Target:  5'- gCGAGGCUggguGGCUGggcaGGCCGGGuCUCg -3'
miRNA:   3'- -GUUUCGGu---UUGACag--CCGGUUC-GAGg -5'
28726 5' -51.2 NC_006146.1 + 22099 0.66 0.988853
Target:  5'- gCGAGGCUggguGGCUGggcaGGCCGGGuCUCg -3'
miRNA:   3'- -GUUUCGGu---UUGACag--CCGGUUC-GAGg -5'
28726 5' -51.2 NC_006146.1 + 122564 0.66 0.990223
Target:  5'- --uGGCCAGACUGgacGCCuGGC-CCa -3'
miRNA:   3'- guuUCGGUUUGACagcCGGuUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 147767 0.66 0.990223
Target:  5'- gCGAAGcCCAGGCUccCGGCCu--CUCCc -3'
miRNA:   3'- -GUUUC-GGUUUGAcaGCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 130064 0.66 0.990223
Target:  5'- aAAGGUCAAGC--UCGGCCGGGaacaCCa -3'
miRNA:   3'- gUUUCGGUUUGacAGCCGGUUCga--GG- -5'
28726 5' -51.2 NC_006146.1 + 139073 0.66 0.990223
Target:  5'- gGAAGCUGGACU-UUGGCCAcgGGCcucgCCu -3'
miRNA:   3'- gUUUCGGUUUGAcAGCCGGU--UCGa---GG- -5'
28726 5' -51.2 NC_006146.1 + 61591 0.66 0.990223
Target:  5'- aAGAGCC-GGCUGcagCGGCCGcGGCcggggCCg -3'
miRNA:   3'- gUUUCGGuUUGACa--GCCGGU-UCGa----GG- -5'
28726 5' -51.2 NC_006146.1 + 116647 0.66 0.990223
Target:  5'- aCAuGGCCAcaAACUGggCGGCCAucucgUCCa -3'
miRNA:   3'- -GUuUCGGU--UUGACa-GCCGGUucg--AGG- -5'
28726 5' -51.2 NC_006146.1 + 10843 0.66 0.990223
Target:  5'- cCGAAGCCAgccAGCa---GGCCAuacGGCUCUc -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGU---UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 86039 0.66 0.990223
Target:  5'- uGGAGCC--GCUGUCu-CCGucGGCUCCu -3'
miRNA:   3'- gUUUCGGuuUGACAGccGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 128217 0.66 0.990223
Target:  5'- -cGGGCCAGACgcucuuUCGGCgCGgggAGCUCUu -3'
miRNA:   3'- guUUCGGUUUGac----AGCCG-GU---UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 153388 0.66 0.990223
Target:  5'- --uGGCCGGAUUGUUGaggguGCCAagggAGUUCCc -3'
miRNA:   3'- guuUCGGUUUGACAGC-----CGGU----UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 68020 0.66 0.991457
Target:  5'- -uAAGCgCAAACUGgggccCGGCCAcgaccagguggcGGCUgCCc -3'
miRNA:   3'- guUUCG-GUUUGACa----GCCGGU------------UCGA-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.