miRNA display CGI


Results 121 - 140 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 94397 0.69 0.946182
Target:  5'- uGGAGCCAGG-UGUgGGCCGugaGGCUUg -3'
miRNA:   3'- gUUUCGGUUUgACAgCCGGU---UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 108886 0.69 0.946182
Target:  5'- aGAGGCCGAGCgccgCGGCCA-GCgagUCa -3'
miRNA:   3'- gUUUCGGUUUGaca-GCCGGUuCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 24940 0.69 0.945273
Target:  5'- -cAGGCCAGGCcccuuagaccCGGCCAGGCcCCa -3'
miRNA:   3'- guUUCGGUUUGaca-------GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 48340 0.69 0.944815
Target:  5'- -uGGGCCAGGCguccaGUCuGGCCAgcgggccggccucgAGUUCCg -3'
miRNA:   3'- guUUCGGUUUGa----CAG-CCGGU--------------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 156919 0.7 0.941537
Target:  5'- cCGAGGCCuGGgUGgCGGCgcugaCGGGCUCCg -3'
miRNA:   3'- -GUUUCGGuUUgACaGCCG-----GUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 67037 0.7 0.941537
Target:  5'- gGGAGCC-GACaGUCGGCCGGGaCggagaCCa -3'
miRNA:   3'- gUUUCGGuUUGaCAGCCGGUUC-Ga----GG- -5'
28726 5' -51.2 NC_006146.1 + 120538 0.7 0.941537
Target:  5'- --cGGCgGGACUGcUGGCCAAGaUCCc -3'
miRNA:   3'- guuUCGgUUUGACaGCCGGUUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 142100 0.7 0.940095
Target:  5'- gAAAGCUggGCUGccccaagugagcccUCGGCCccaggguauGCUCCc -3'
miRNA:   3'- gUUUCGGuuUGAC--------------AGCCGGuu-------CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 123259 0.7 0.936641
Target:  5'- -uGGGCCGGGCcG-CGGCCAgagacGGCUCg -3'
miRNA:   3'- guUUCGGUUUGaCaGCCGGU-----UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 41356 0.7 0.936641
Target:  5'- cCAGGGCCuGGCgGUggUGGCCGuGGCUCUg -3'
miRNA:   3'- -GUUUCGGuUUGaCA--GCCGGU-UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 111627 0.7 0.931491
Target:  5'- --cAGCCcagguccgcgaAGAC-GUCGGCCAGGC-CCu -3'
miRNA:   3'- guuUCGG-----------UUUGaCAGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 109995 0.7 0.931491
Target:  5'- cUAAGGCCGggAugUGg-GGCCucaGGGCUCCg -3'
miRNA:   3'- -GUUUCGGU--UugACagCCGG---UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 99385 0.7 0.931491
Target:  5'- uGAGGCCcagGAGCgaGUCGGCCAGGggggugCCg -3'
miRNA:   3'- gUUUCGG---UUUGa-CAGCCGGUUCga----GG- -5'
28726 5' -51.2 NC_006146.1 + 128141 0.7 0.931491
Target:  5'- ---cGCCugcacCUGUCGGCCcuGCUgCCg -3'
miRNA:   3'- guuuCGGuuu--GACAGCCGGuuCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 46741 0.7 0.920427
Target:  5'- gGAGGCCAcGCU---GGCCAGGgUCCu -3'
miRNA:   3'- gUUUCGGUuUGAcagCCGGUUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 29607 0.7 0.920427
Target:  5'- --cAGCCAGGCUGaacCcGCCAAuGCUCCc -3'
miRNA:   3'- guuUCGGUUUGACa--GcCGGUU-CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 170375 0.71 0.914513
Target:  5'- aGAGGCC-GugUGUggaGGCCGGGcCUCCc -3'
miRNA:   3'- gUUUCGGuUugACAg--CCGGUUC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 169444 0.71 0.914513
Target:  5'- aGAGGCC-GugUGUggaGGCCGGGcCUCCc -3'
miRNA:   3'- gUUUCGGuUugACAg--CCGGUUC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 88692 0.71 0.914513
Target:  5'- uGGAGCCAgugggucuuggGACUGUugUGGCUGcGGCUCCc -3'
miRNA:   3'- gUUUCGGU-----------UUGACA--GCCGGU-UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 131701 0.71 0.914513
Target:  5'- cCAAGGCCGAcuACUG-CGGCCu-GCUg- -3'
miRNA:   3'- -GUUUCGGUU--UGACaGCCGGuuCGAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.