miRNA display CGI


Results 161 - 180 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 117252 0.72 0.850275
Target:  5'- cCGGGGCCAGGgggGUCGGC-AGGUUCCc -3'
miRNA:   3'- -GUUUCGGUUUga-CAGCCGgUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 39775 0.72 0.850275
Target:  5'- uGGAGUCAGGCU-UgGGCCcgGAGCUCCc -3'
miRNA:   3'- gUUUCGGUUUGAcAgCCGG--UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 121341 0.73 0.842001
Target:  5'- uCGAGGCCAuGCUGggccUGGCCGgcguGGcCUCCg -3'
miRNA:   3'- -GUUUCGGUuUGACa---GCCGGU----UC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 46698 0.73 0.833524
Target:  5'- aGGAGUCccaguAAgaGUCGGCCGcggcGGCUCCg -3'
miRNA:   3'- gUUUCGGu----UUgaCAGCCGGU----UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 49480 0.73 0.824851
Target:  5'- gAGGGCCGcGgUGUCGGCCAGGggCg -3'
miRNA:   3'- gUUUCGGUuUgACAGCCGGUUCgaGg -5'
28726 5' -51.2 NC_006146.1 + 80014 0.73 0.806954
Target:  5'- -uGGGcCCAggUUGagGGCCAGGCUCg -3'
miRNA:   3'- guUUC-GGUuuGACagCCGGUUCGAGg -5'
28726 5' -51.2 NC_006146.1 + 46596 0.74 0.78838
Target:  5'- uCAuGGCCacgaugGggUUGUCGGCCAGGUcuUCCa -3'
miRNA:   3'- -GUuUCGG------UuuGACAGCCGGUUCG--AGG- -5'
28726 5' -51.2 NC_006146.1 + 125358 0.74 0.778864
Target:  5'- gGAGGCCAGGg---CGGCCAAGC-CCa -3'
miRNA:   3'- gUUUCGGUUUgacaGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 42907 0.74 0.778864
Target:  5'- cUAGGGCCucugucccGGCUGUCagcagcggcGCCAAGCUCCg -3'
miRNA:   3'- -GUUUCGGu-------UUGACAGc--------CGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 109322 0.74 0.769207
Target:  5'- gGAAGCCu-GCUGcaCGGCCGagccaaacAGCUCCu -3'
miRNA:   3'- gUUUCGGuuUGACa-GCCGGU--------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 43519 0.74 0.749513
Target:  5'- -cGGGCCAGGCUGcCGGCCAccaucaguggGGUgUCCg -3'
miRNA:   3'- guUUCGGUUUGACaGCCGGU----------UCG-AGG- -5'
28726 5' -51.2 NC_006146.1 + 103140 0.74 0.749513
Target:  5'- --uGGCCGAGCUGggggaGGUCuuuGGCUCCu -3'
miRNA:   3'- guuUCGGUUUGACag---CCGGu--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 94169 0.75 0.729379
Target:  5'- -uGGGCCuccacgAAGCUGUCGGCCucGAGCgugUCCa -3'
miRNA:   3'- guUUCGG------UUUGACAGCCGG--UUCG---AGG- -5'
28726 5' -51.2 NC_006146.1 + 67782 0.75 0.719172
Target:  5'- --cGGCCAggGACgUGacggCGGCCAGGCUCUg -3'
miRNA:   3'- guuUCGGU--UUG-ACa---GCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 168598 0.75 0.719172
Target:  5'- --uGGCCugGAACUGUCggaaggagGGCCuGGCUCCg -3'
miRNA:   3'- guuUCGG--UUUGACAG--------CCGGuUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 89072 0.75 0.708886
Target:  5'- uGGAGCCu-GCUGguguugUGGCCAcGGCUCCu -3'
miRNA:   3'- gUUUCGGuuUGACa-----GCCGGU-UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 102035 0.76 0.656611
Target:  5'- uCAGGGCCAGGCUGUCG-CCAGccuGCUUg -3'
miRNA:   3'- -GUUUCGGUUUGACAGCcGGUU---CGAGg -5'
28726 5' -51.2 NC_006146.1 + 4913 0.77 0.635488
Target:  5'- aCAGAGCCGGacccucGCUGUCggguGGCCGuGCUCUg -3'
miRNA:   3'- -GUUUCGGUU------UGACAG----CCGGUuCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 12973 0.77 0.603804
Target:  5'- uGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 28363 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.