miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 64194 0.67 0.98384
Target:  5'- aGGAGUugCAAGgUGUC-GCgGAGCUCCg -3'
miRNA:   3'- gUUUCG--GUUUgACAGcCGgUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 64315 0.71 0.888346
Target:  5'- uGGGGCCGuACUGgCGGCagUAAGCUCUc -3'
miRNA:   3'- gUUUCGGUuUGACaGCCG--GUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 64833 0.66 0.99346
Target:  5'- --cAGCUcguguuuGGGCUGcaccuUCuGCCAGGCUCCa -3'
miRNA:   3'- guuUCGG-------UUUGAC-----AGcCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 65070 0.69 0.962299
Target:  5'- gCAgcGCCuccggaUGUCGGCCGGGgaCCc -3'
miRNA:   3'- -GUuuCGGuuug--ACAGCCGGUUCgaGG- -5'
28726 5' -51.2 NC_006146.1 + 67037 0.7 0.941537
Target:  5'- gGGAGCC-GACaGUCGGCCGGGaCggagaCCa -3'
miRNA:   3'- gUUUCGGuUUGaCAGCCGGUUC-Ga----GG- -5'
28726 5' -51.2 NC_006146.1 + 67598 0.68 0.968633
Target:  5'- -uGGGCCAGauagacguagcgcACgagGUCGGCCGAGg-CCa -3'
miRNA:   3'- guUUCGGUU-------------UGa--CAGCCGGUUCgaGG- -5'
28726 5' -51.2 NC_006146.1 + 67782 0.75 0.719172
Target:  5'- --cGGCCAggGACgUGacggCGGCCAGGCUCUg -3'
miRNA:   3'- guuUCGGU--UUG-ACa---GCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 68020 0.66 0.991457
Target:  5'- -uAAGCgCAAACUGgggccCGGCCAcgaccagguggcGGCUgCCc -3'
miRNA:   3'- guUUCG-GUUUGACa----GCCGGU------------UCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 68750 0.69 0.954724
Target:  5'- gGAGGCCcag--GU-GGCCAAGCUUCa -3'
miRNA:   3'- gUUUCGGuuugaCAgCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 69088 0.66 0.994436
Target:  5'- ---cGCCGAACUcGUCG-UCGAGC-CCu -3'
miRNA:   3'- guuuCGGUUUGA-CAGCcGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 73508 0.67 0.98514
Target:  5'- gCGGGGUCAcGCgcaggcuuacuuuuUGcaUGGCCAGGCUCCg -3'
miRNA:   3'- -GUUUCGGUuUG--------------ACa-GCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 74572 0.67 0.985671
Target:  5'- ----aCCGGGCUGUCgaaGGUCAcuGCUCCg -3'
miRNA:   3'- guuucGGUUUGACAG---CCGGUu-CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 75635 0.67 0.987339
Target:  5'- gAAGGCCAuauAGCUugcagaGGCCAAGgaCCg -3'
miRNA:   3'- gUUUCGGU---UUGAcag---CCGGUUCgaGG- -5'
28726 5' -51.2 NC_006146.1 + 76500 0.67 0.979654
Target:  5'- ---uGCCAAGCcucaCGGCCcacaccuGGCUCCa -3'
miRNA:   3'- guuuCGGUUUGaca-GCCGGu------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 77546 0.69 0.957868
Target:  5'- -cGGGCCAcguguacguggcGCUGUCcagGGCCAGGCacUCCa -3'
miRNA:   3'- guUUCGGUu-----------UGACAG---CCGGUUCG--AGG- -5'
28726 5' -51.2 NC_006146.1 + 78561 0.66 0.988853
Target:  5'- -cGAGCCGccccauaucAGCUGccccaGGCCGGGC-CCg -3'
miRNA:   3'- guUUCGGU---------UUGACag---CCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 80014 0.73 0.806954
Target:  5'- -uGGGcCCAggUUGagGGCCAGGCUCg -3'
miRNA:   3'- guUUC-GGUuuGACagCCGGUUCGAGg -5'
28726 5' -51.2 NC_006146.1 + 86039 0.66 0.990223
Target:  5'- uGGAGCC--GCUGUCu-CCGucGGCUCCu -3'
miRNA:   3'- gUUUCGGuuUGACAGccGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 88692 0.71 0.914513
Target:  5'- uGGAGCCAgugggucuuggGACUGUugUGGCUGcGGCUCCc -3'
miRNA:   3'- gUUUCGGU-----------UUGACA--GCCGGU-UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 88803 0.66 0.992564
Target:  5'- uGGAGCCu-GCUGggcauguuuggcUgGGCCugAGGCUCCc -3'
miRNA:   3'- gUUUCGGuuUGAC------------AgCCGG--UUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.