miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 89017 0.66 0.992564
Target:  5'- aCGGAGCCugccguGGAUguuggGUCugaGGCCGAgGCUCCc -3'
miRNA:   3'- -GUUUCGG------UUUGa----CAG---CCGGUU-CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 89072 0.75 0.708886
Target:  5'- uGGAGCCu-GCUGguguugUGGCCAcGGCUCCu -3'
miRNA:   3'- gUUUCGGuuUGACa-----GCCGGU-UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 90417 0.68 0.968944
Target:  5'- uCAAGGCCGGAUUGcCGcaacguGUCAuGGCUCCc -3'
miRNA:   3'- -GUUUCGGUUUGACaGC------CGGU-UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 91209 0.66 0.991457
Target:  5'- ---cGCCugcCUGUUGGCCGGuCUCUg -3'
miRNA:   3'- guuuCGGuuuGACAGCCGGUUcGAGG- -5'
28726 5' -51.2 NC_006146.1 + 93922 0.68 0.97471
Target:  5'- gGAGGCguagaAGGCgg-CGGCgGGGCUCCg -3'
miRNA:   3'- gUUUCGg----UUUGacaGCCGgUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 94169 0.75 0.729379
Target:  5'- -uGGGCCuccacgAAGCUGUCGGCCucGAGCgugUCCa -3'
miRNA:   3'- guUUCGG------UUUGACAGCCGG--UUCG---AGG- -5'
28726 5' -51.2 NC_006146.1 + 94397 0.69 0.946182
Target:  5'- uGGAGCCAGG-UGUgGGCCGugaGGCUUg -3'
miRNA:   3'- gUUUCGGUUUgACAgCCGGU---UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 95505 0.71 0.894578
Target:  5'- gAAGGCCuccauauccggGAGCUGUCgggugcggcgccuGGCCAGGgUCCc -3'
miRNA:   3'- gUUUCGG-----------UUUGACAG-------------CCGGUUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 95594 0.66 0.992564
Target:  5'- uGGGGCgGGGcCUGUaaguaaGGCCAAGCUa- -3'
miRNA:   3'- gUUUCGgUUU-GACAg-----CCGGUUCGAgg -5'
28726 5' -51.2 NC_006146.1 + 98334 0.66 0.994436
Target:  5'- aCGGGGCCGGGCg--CGGCCcgucccGgUCCa -3'
miRNA:   3'- -GUUUCGGUUUGacaGCCGGuu----CgAGG- -5'
28726 5' -51.2 NC_006146.1 + 98952 0.71 0.908345
Target:  5'- aCGAAGCCcaggacAAACUcGUCGGCaUAGGC-CCa -3'
miRNA:   3'- -GUUUCGG------UUUGA-CAGCCG-GUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 99385 0.7 0.931491
Target:  5'- uGAGGCCcagGAGCgaGUCGGCCAGGggggugCCg -3'
miRNA:   3'- gUUUCGG---UUUGa-CAGCCGGUUCga----GG- -5'
28726 5' -51.2 NC_006146.1 + 101419 0.67 0.979654
Target:  5'- aCGAGGCgGucuuCgucUCGGCCAAGCUgCa -3'
miRNA:   3'- -GUUUCGgUuu--Gac-AGCCGGUUCGAgG- -5'
28726 5' -51.2 NC_006146.1 + 102035 0.76 0.656611
Target:  5'- uCAGGGCCAGGCUGUCG-CCAGccuGCUUg -3'
miRNA:   3'- -GUUUCGGUUUGACAGCcGGUU---CGAGg -5'
28726 5' -51.2 NC_006146.1 + 102857 0.66 0.994436
Target:  5'- --cAGCCAGGgcagccgccacCUGgucgUGGCCGGGCcCCa -3'
miRNA:   3'- guuUCGGUUU-----------GACa---GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 103140 0.74 0.749513
Target:  5'- --uGGCCGAGCUGggggaGGUCuuuGGCUCCu -3'
miRNA:   3'- guuUCGGUUUGACag---CCGGu--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 103745 0.69 0.950576
Target:  5'- cCGGAcGCCGcGCUcaGgagCGGCCAgcGGCUCCc -3'
miRNA:   3'- -GUUU-CGGUuUGA--Ca--GCCGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 103799 0.66 0.993554
Target:  5'- -cGGGaCCAAaguACUcGUCuGCCAagAGCUCCg -3'
miRNA:   3'- guUUC-GGUU---UGA-CAGcCGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 103871 0.68 0.977281
Target:  5'- --cGGCC-GACUGUCGGCUcccggacacgcGGCUCa -3'
miRNA:   3'- guuUCGGuUUGACAGCCGGu----------UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 108886 0.69 0.946182
Target:  5'- aGAGGCCGAGCgccgCGGCCA-GCgagUCa -3'
miRNA:   3'- gUUUCGGUUUGaca-GCCGGUuCGa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.