miRNA display CGI


Results 121 - 140 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 109322 0.74 0.769207
Target:  5'- gGAAGCCu-GCUGcaCGGCCGagccaaacAGCUCCu -3'
miRNA:   3'- gUUUCGGuuUGACa-GCCGGU--------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 109995 0.7 0.931491
Target:  5'- cUAAGGCCGggAugUGg-GGCCucaGGGCUCCg -3'
miRNA:   3'- -GUUUCGGU--UugACagCCGG---UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 111627 0.7 0.931491
Target:  5'- --cAGCCcagguccgcgaAGAC-GUCGGCCAGGC-CCu -3'
miRNA:   3'- guuUCGG-----------UUUGaCAGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 111908 0.69 0.954724
Target:  5'- gGGAGgCAGA-UGUUGGCCAGGUUgCa -3'
miRNA:   3'- gUUUCgGUUUgACAGCCGGUUCGAgG- -5'
28726 5' -51.2 NC_006146.1 + 112853 0.67 0.981838
Target:  5'- aCAGguAGCCGGcggagacuaugcGCUcGUaGGCCGGGCUCUg -3'
miRNA:   3'- -GUU--UCGGUU------------UGA-CAgCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 113039 0.69 0.954724
Target:  5'- --cGGCCAGGacGUCGGCCucgGGgUCCa -3'
miRNA:   3'- guuUCGGUUUgaCAGCCGGu--UCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 113495 0.66 0.992564
Target:  5'- gUAGAGgCGuGC-GUCGGCCGGGCa-- -3'
miRNA:   3'- -GUUUCgGUuUGaCAGCCGGUUCGagg -5'
28726 5' -51.2 NC_006146.1 + 115410 0.68 0.971933
Target:  5'- gGAGGCa--GCUGgCGGCCGGGcCUCg -3'
miRNA:   3'- gUUUCGguuUGACaGCCGGUUC-GAGg -5'
28726 5' -51.2 NC_006146.1 + 116647 0.66 0.990223
Target:  5'- aCAuGGCCAcaAACUGggCGGCCAucucgUCCa -3'
miRNA:   3'- -GUuUCGGU--UUGACa-GCCGGUucg--AGG- -5'
28726 5' -51.2 NC_006146.1 + 117252 0.72 0.850275
Target:  5'- cCGGGGCCAGGgggGUCGGC-AGGUUCCc -3'
miRNA:   3'- -GUUUCGGUUUga-CAGCCGgUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 117720 0.69 0.946182
Target:  5'- cCAAGGCCGGGgccgaGGCCGAGCcuUCCg -3'
miRNA:   3'- -GUUUCGGUUUgacagCCGGUUCG--AGG- -5'
28726 5' -51.2 NC_006146.1 + 119292 0.67 0.981627
Target:  5'- aCGGAcGCCGAAgUGUgguacgcUGGCCccucuGGCUCCc -3'
miRNA:   3'- -GUUU-CGGUUUgACA-------GCCGGu----UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 120538 0.7 0.941537
Target:  5'- --cGGCgGGACUGcUGGCCAAGaUCCc -3'
miRNA:   3'- guuUCGgUUUGACaGCCGGUUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 121341 0.73 0.842001
Target:  5'- uCGAGGCCAuGCUGggccUGGCCGgcguGGcCUCCg -3'
miRNA:   3'- -GUUUCGGUuUGACa---GCCGGU----UC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 122564 0.66 0.990223
Target:  5'- --uGGCCAGACUGgacGCCuGGC-CCa -3'
miRNA:   3'- guuUCGGUUUGACagcCGGuUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 122809 0.79 0.520834
Target:  5'- cCGAGGCCGcGCUGUCGGCCGccgugAGCg-- -3'
miRNA:   3'- -GUUUCGGUuUGACAGCCGGU-----UCGagg -5'
28726 5' -51.2 NC_006146.1 + 123028 0.68 0.968944
Target:  5'- cCGAGGCCGAGg---CGGCCcAGgUCCg -3'
miRNA:   3'- -GUUUCGGUUUgacaGCCGGuUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 123259 0.7 0.936641
Target:  5'- -uGGGCCGGGCcG-CGGCCAgagacGGCUCg -3'
miRNA:   3'- guUUCGGUUUGaCaGCCGGU-----UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 123498 0.66 0.992564
Target:  5'- --uGGUCAucAGCaUGgCGGCCAGacGCUCCa -3'
miRNA:   3'- guuUCGGU--UUG-ACaGCCGGUU--CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 125358 0.74 0.778864
Target:  5'- gGAGGCCAGGg---CGGCCAAGC-CCa -3'
miRNA:   3'- gUUUCGGUUUgacaGCCGGUUCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.