miRNA display CGI


Results 141 - 160 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 127055 0.67 0.987339
Target:  5'- aGAGGCCcucGAGCUGgCGGCgCGGGaagCCg -3'
miRNA:   3'- gUUUCGG---UUUGACaGCCG-GUUCga-GG- -5'
28726 5' -51.2 NC_006146.1 + 127420 0.66 0.988709
Target:  5'- cCGGAGCCGGugUcaaCGGCCGccgaggaGGCUgCCg -3'
miRNA:   3'- -GUUUCGGUUugAca-GCCGGU-------UCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 128141 0.7 0.931491
Target:  5'- ---cGCCugcacCUGUCGGCCcuGCUgCCg -3'
miRNA:   3'- guuuCGGuuu--GACAGCCGGuuCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 128217 0.66 0.990223
Target:  5'- -cGGGCCAGACgcucuuUCGGCgCGgggAGCUCUu -3'
miRNA:   3'- guUUCGGUUUGac----AGCCG-GU---UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 128274 0.72 0.881193
Target:  5'- uGAGGCCcacGGCgg-CGGCCGAGCcCCa -3'
miRNA:   3'- gUUUCGGu--UUGacaGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 130064 0.66 0.990223
Target:  5'- aAAGGUCAAGC--UCGGCCGGGaacaCCa -3'
miRNA:   3'- gUUUCGGUUUGacAGCCGGUUCga--GG- -5'
28726 5' -51.2 NC_006146.1 + 131066 0.69 0.95863
Target:  5'- ---cGCCGGcccACUGUgCGGCCGAGg-CCg -3'
miRNA:   3'- guuuCGGUU---UGACA-GCCGGUUCgaGG- -5'
28726 5' -51.2 NC_006146.1 + 131479 0.67 0.981838
Target:  5'- -cGGGCCAGGCcc-CGGCCAAcuucuGCUUCa -3'
miRNA:   3'- guUUCGGUUUGacaGCCGGUU-----CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 131701 0.71 0.914513
Target:  5'- cCAAGGCCGAcuACUG-CGGCCu-GCUg- -3'
miRNA:   3'- -GUUUCGGUU--UGACaGCCGGuuCGAgg -5'
28726 5' -51.2 NC_006146.1 + 132622 0.66 0.992564
Target:  5'- aAGGGCCGGcAgUGU-GGCCc-GCUCCa -3'
miRNA:   3'- gUUUCGGUU-UgACAgCCGGuuCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 137039 0.67 0.987339
Target:  5'- gGAGGCCGGG-UGggGGCCugGGGUUCCg -3'
miRNA:   3'- gUUUCGGUUUgACagCCGG--UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 138215 0.66 0.993554
Target:  5'- uGAGGCUggGCUGaCGGggaUAAGCaUCCc -3'
miRNA:   3'- gUUUCGGuuUGACaGCCg--GUUCG-AGG- -5'
28726 5' -51.2 NC_006146.1 + 139073 0.66 0.990223
Target:  5'- gGAAGCUGGACU-UUGGCCAcgGGCcucgCCu -3'
miRNA:   3'- gUUUCGGUUUGAcAGCCGGU--UCGa---GG- -5'
28726 5' -51.2 NC_006146.1 + 139123 0.67 0.979654
Target:  5'- ---uGUCAAuuggggGCUGUgGGCCGaacgggGGCUCCc -3'
miRNA:   3'- guuuCGGUU------UGACAgCCGGU------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 139616 0.66 0.992564
Target:  5'- aGAAGCCucuguAUUGcUUGGCCAAGUcacuUCUg -3'
miRNA:   3'- gUUUCGGuu---UGAC-AGCCGGUUCG----AGG- -5'
28726 5' -51.2 NC_006146.1 + 142100 0.7 0.940095
Target:  5'- gAAAGCUggGCUGccccaagugagcccUCGGCCccaggguauGCUCCc -3'
miRNA:   3'- gUUUCGGuuUGAC--------------AGCCGGuu-------CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 142335 0.71 0.888346
Target:  5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 142574 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 145413 0.71 0.888346
Target:  5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 145652 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.